[ { "anim_execution": { "amendment": "P1-ANIM-MUMMER4-r1", "configured_pair_timeout": null, "configured_query_budget": null, "diagnostic_origin": "generated", "execution_profile": "terobacter.anim-execution/2", "inherited_restrictions": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_mib": null, "method_profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "not_run_reference_ids": [], "pair_seconds": null, "pair_workers": 1, "pairs": [], "query_seconds": null, "query_threads": 1, "stop_reason": "not_required", "wall_seconds": 0.000536844 }, "anim_plan": { "anim_executed": false, "blocking_reasons": [], "contract_revision": "P1-r1", "counts": { "attempted": 0, "completed": 0, "failed": 0, "missing_orientation": 0, "no_alignment": 0, "not_run": 0, "required": 0, "supplied_outside_plan": 0, "unit": "reciprocal_pair" }, "decisive_vetoes": [], "implementation": { "name": "pterobacter", "version": "0.0.0" }, "input": { "anim": { "binding": "supplied_records", "bound_pairs": [], "excluded": [], "method_profile": null, "other_query_records": 0, "source": "supplied_saved_records", "unattributed_records": 0 }, "engine_version": "0.3.2", "evidence_schema": "2.0.0-dev-evidence", "evidence_sha256": "fa30effe40ead1906508371b3e110d4a4a982991c675e2122d7703767103b9b7", "kind": "assembly", "mask": { "assessed_panel_reference_count": 140, "excluded_reference_ids": [], "panel_reference_count": 140 }, "primary_inventory_sha256": "254ae64f778017decf384eb946997722f73f9ae25e1001fc25cd1eb7f72b305b", "query_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "verification": "pure_contract_checks; external_artifacts_and_origin_require_file_wrapper" }, "known_challenges": [], "max_skani_ani_percent": 100.0, "nearest_parent": null, "outstanding_competitors": [], "outstanding_witnesses": [], "passing_witness": null, "policy_id": "conservative-assembly-anim-v2", "policy_mode": "default_candidate", "requested_pairs": [], "schema": "terobacter.rescue-plan/1", "settings_sha256": "a09608fda315c530db1f6699c4e25e3e6ac0c2b26cde26e60dbe9c467110089b", "stage": "not_triggered", "thresholds": { "both_af_minimum": "80", "conflict_ani": "96", "species_ani": "96", "subspecies_ani": "98", "subspecies_margin_percentage_points": "1", "supplied": null, "trigger_lower_ani": "94.5" }, "trigger": false, "trigger_state": "at_or_above_96_v1_route", "validation_status": "not_yet_validated", "witness_candidates": [] }, "call_basis": "skani", "challenge_evidence": [], "challenges": [], "competitor_evaluation": "not_required", "contract_revision": "P1-r1", "counts": { "attempted": 0, "completed": 0, "failed": 0, "missing_orientation": 0, "no_alignment": 0, "not_run": 0, "required": 0, "supplied_outside_plan": 0, "unit": "reciprocal_pair" }, "data_provenance": { "anim_evidence_directory": "batch-alignments", "anim_manifest_sha256": "02cd57a36119558ae62b93d8d87b1ef5563f3c8009040fa0867da13027ad195d", "anim_trust": "embedded_catalogue", "catalogue_sha256": "873353f91dee10efc5f41ec86daceeeb5a6e841e97e885fdd7912853dda25ff9", "citation": { "doi": "10.6084/m9.figshare.34640883.v1", "record_version": 1, "title": "Enterobacter reference database for Pterobacter, version 2026-10-15", "url": "https://figshare.com/articles/dataset/Enterobacter_reference_database_for_Pterobacter_version_2026-10-15/34640883" }, "database": "enterobacter-reference", "mlst_manifest_sha256": "0f0a4bd051e7a29d97f530a38982026df10ca223805e7b0147b19796763978dd", "mlst_requested": true, "mlst_trust": "embedded_catalogue", "reference_manifest_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "reference_trust": "embedded_catalogue", "status": "published", "version": "2026-10-15" }, "evaluation_status": "complete", "evidence": { "assignment": { "genomovar_id": null, "lineage_id": null, "reason": "native_decision_pending", "species_id": null, "species_name": null, "status": "not_evaluated", "subspecies_id": null, "subspecies_name": null }, "duplicate_rows_collapsed": 0, "evidence_status": "estimates_returned", "input_kind": "assembly", "nearest_reference_ids": [ "primary_whole:GCA_013738375.1" ], "not_returned_reference_count": 0, "provenance": { "engine_version": "0.3.2", "input_kind": "assembly", "query_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "reference_component_id": "primary_whole", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "search_exit_code": 0, "sequence_scope": "whole_assembly_as_supplied" }, "ranked_reference_evidence": [ { "aligned_fraction_query_percent": 99.99, "aligned_fraction_reference_percent": 99.99, "ani_percent": 100.00, "lineage_id": "", "minimum_directional_af_percent": 99.99, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013738375.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 82.69, "aligned_fraction_reference_percent": 92.17, "ani_percent": 98.97, "lineage_id": "", "minimum_directional_af_percent": 82.69, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729745.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 85.66, "aligned_fraction_reference_percent": 90.75, "ani_percent": 98.97, "lineage_id": "", "minimum_directional_af_percent": 85.66, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013625435.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 85.51, "aligned_fraction_reference_percent": 91.21, "ani_percent": 98.97, "lineage_id": "", "minimum_directional_af_percent": 85.51, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_052922205.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 83.07, "aligned_fraction_reference_percent": 90.16, "ani_percent": 98.92, "lineage_id": "", "minimum_directional_af_percent": 83.07, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_027595125.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 83.56, "aligned_fraction_reference_percent": 89.63, "ani_percent": 98.88, "lineage_id": "", "minimum_directional_af_percent": 83.56, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_040096145.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 84.38, "aligned_fraction_reference_percent": 86.96, "ani_percent": 98.61, "lineage_id": "", "minimum_directional_af_percent": 84.38, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_052921675.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 85.41, "aligned_fraction_reference_percent": 86.58, "ani_percent": 98.60, "lineage_id": "", "minimum_directional_af_percent": 85.41, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_009834325.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 81.75, "aligned_fraction_reference_percent": 87.21, "ani_percent": 96.08, "lineage_id": "", "minimum_directional_af_percent": 81.75, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013731155.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 80.09, "aligned_fraction_reference_percent": 86.85, "ani_percent": 95.89, "lineage_id": "", "minimum_directional_af_percent": 80.09, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013743755.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 78.60, "aligned_fraction_reference_percent": 84.53, "ani_percent": 95.77, "lineage_id": "", "minimum_directional_af_percent": 78.60, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013726395.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 75.89, "aligned_fraction_reference_percent": 80.84, "ani_percent": 95.77, "lineage_id": "", "minimum_directional_af_percent": 75.89, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_032389435.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 78.83, "aligned_fraction_reference_percent": 87.02, "ani_percent": 95.75, "lineage_id": "", "minimum_directional_af_percent": 78.83, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729705.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 79.95, "aligned_fraction_reference_percent": 85.91, "ani_percent": 95.75, "lineage_id": "", "minimum_directional_af_percent": 79.95, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013743295.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 80.45, "aligned_fraction_reference_percent": 83.23, "ani_percent": 95.74, "lineage_id": "", "minimum_directional_af_percent": 80.45, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_002204775.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 77.80, "aligned_fraction_reference_percent": 83.39, "ani_percent": 95.74, "lineage_id": "", "minimum_directional_af_percent": 77.80, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_025369895.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 79.60, "aligned_fraction_reference_percent": 84.97, "ani_percent": 95.74, "lineage_id": "", "minimum_directional_af_percent": 79.60, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030848005.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 78.22, "aligned_fraction_reference_percent": 87.50, "ani_percent": 95.72, "lineage_id": "", "minimum_directional_af_percent": 78.22, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729785.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 78.02, "aligned_fraction_reference_percent": 84.78, "ani_percent": 95.64, "lineage_id": "", "minimum_directional_af_percent": 78.02, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_051092005.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 79.87, "aligned_fraction_reference_percent": 83.21, "ani_percent": 95.64, "lineage_id": "", "minimum_directional_af_percent": 79.87, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_053699795.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 79.88, "aligned_fraction_reference_percent": 83.61, "ani_percent": 95.52, "lineage_id": "", "minimum_directional_af_percent": 79.88, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_051091715.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 80.08, "aligned_fraction_reference_percent": 82.60, "ani_percent": 95.51, "lineage_id": "", "minimum_directional_af_percent": 80.08, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030411255.2", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 77.98, "aligned_fraction_reference_percent": 85.04, "ani_percent": 95.49, "lineage_id": "", "minimum_directional_af_percent": 77.98, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729725.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 77.28, "aligned_fraction_reference_percent": 82.75, "ani_percent": 95.48, "lineage_id": "", "minimum_directional_af_percent": 77.28, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_054871305.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 81.37, "aligned_fraction_reference_percent": 81.15, "ani_percent": 95.40, "lineage_id": "", "minimum_directional_af_percent": 81.15, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_043965205.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 79.31, "aligned_fraction_reference_percent": 77.13, "ani_percent": 95.40, "lineage_id": "", "minimum_directional_af_percent": 77.13, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_046097115.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 78.82, "aligned_fraction_reference_percent": 79.26, "ani_percent": 95.39, "lineage_id": "", "minimum_directional_af_percent": 78.82, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_050871265.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 78.47, "aligned_fraction_reference_percent": 83.41, "ani_percent": 95.35, "lineage_id": "", "minimum_directional_af_percent": 78.47, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030848125.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 78.80, "aligned_fraction_reference_percent": 79.90, "ani_percent": 95.33, "lineage_id": "", "minimum_directional_af_percent": 78.80, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_036936505.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 76.35, "aligned_fraction_reference_percent": 81.08, "ani_percent": 94.98, "lineage_id": "", "minimum_directional_af_percent": 76.35, "name_status": "validly_published_synonym", "reference_id": "primary_whole:GCA_039734725.2", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 75.90, "aligned_fraction_reference_percent": 80.52, "ani_percent": 94.32, "lineage_id": "", "minimum_directional_af_percent": 75.90, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019048245.1", "reference_role": "type_anchor", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 75.74, "aligned_fraction_reference_percent": 78.51, "ani_percent": 94.32, "lineage_id": "", "minimum_directional_af_percent": 75.74, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045037665.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 75.92, "aligned_fraction_reference_percent": 83.49, "ani_percent": 94.20, "lineage_id": "", "minimum_directional_af_percent": 75.92, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043973395.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 74.92, "aligned_fraction_reference_percent": 85.93, "ani_percent": 94.19, "lineage_id": "", "minimum_directional_af_percent": 74.92, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031852185.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.98, "aligned_fraction_reference_percent": 79.28, "ani_percent": 94.09, "lineage_id": "", "minimum_directional_af_percent": 73.98, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053349035.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.61, "aligned_fraction_reference_percent": 84.30, "ani_percent": 93.76, "lineage_id": "", "minimum_directional_af_percent": 73.61, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004331385.1", "reference_role": "type_anchor", "species_id": "ECTX-SP018", "species_name": "Enterobacter quasihormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 69.25, "aligned_fraction_reference_percent": 71.35, "ani_percent": 91.50, "lineage_id": "", "minimum_directional_af_percent": 69.25, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_013376835.1", "reference_role": "diversity", "species_id": "ECTX-SP016", "species_name": "Enterobacter pasteurii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 68.46, "aligned_fraction_reference_percent": 74.14, "ani_percent": 91.45, "lineage_id": "", "minimum_directional_af_percent": 68.46, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_028890245.1", "reference_role": "type_anchor", "species_id": "ECTX-SP016", "species_name": "Enterobacter pasteurii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.37, "aligned_fraction_reference_percent": 60.75, "ani_percent": 89.67, "lineage_id": "", "minimum_directional_af_percent": 55.37, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031218175.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.25, "aligned_fraction_reference_percent": 60.65, "ani_percent": 89.54, "lineage_id": "", "minimum_directional_af_percent": 55.25, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004804395.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.69, "aligned_fraction_reference_percent": 59.83, "ani_percent": 89.51, "lineage_id": "", "minimum_directional_af_percent": 55.69, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053165385.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.70, "aligned_fraction_reference_percent": 60.62, "ani_percent": 89.48, "lineage_id": "", "minimum_directional_af_percent": 55.70, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045348695.1", "reference_role": "diversity", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.97, "aligned_fraction_reference_percent": 61.35, "ani_percent": 89.46, "lineage_id": "", "minimum_directional_af_percent": 55.97, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043967505.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.62, "aligned_fraction_reference_percent": 57.58, "ani_percent": 89.43, "lineage_id": "", "minimum_directional_af_percent": 55.62, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019046905.1", "reference_role": "type_anchor", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 53.36, "aligned_fraction_reference_percent": 56.57, "ani_percent": 89.41, "lineage_id": "", "minimum_directional_af_percent": 53.36, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_039718975.1", "reference_role": "diversity", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.22, "aligned_fraction_reference_percent": 54.67, "ani_percent": 89.37, "lineage_id": "", "minimum_directional_af_percent": 54.22, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045278925.1", "reference_role": "diversity", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.64, "aligned_fraction_reference_percent": 59.69, "ani_percent": 89.35, "lineage_id": "", "minimum_directional_af_percent": 55.64, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_054382355.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.78, "aligned_fraction_reference_percent": 60.84, "ani_percent": 89.33, "lineage_id": "", "minimum_directional_af_percent": 54.78, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043970685.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.52, "aligned_fraction_reference_percent": 55.44, "ani_percent": 89.29, "lineage_id": "", "minimum_directional_af_percent": 52.52, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030410235.2", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 55.29, "aligned_fraction_reference_percent": 59.83, "ani_percent": 89.26, "lineage_id": "", "minimum_directional_af_percent": 55.29, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043966825.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.31, "aligned_fraction_reference_percent": 60.15, "ani_percent": 89.17, "lineage_id": "", "minimum_directional_af_percent": 54.31, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_026344075.1", "reference_role": "type_anchor", "species_id": "ECTX-SP014", "species_name": "Enterobacter nematophilus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 57.10, "aligned_fraction_reference_percent": 60.96, "ani_percent": 89.14, "lineage_id": "", "minimum_directional_af_percent": 57.10, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_977007405.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 56.48, "aligned_fraction_reference_percent": 60.81, "ani_percent": 89.05, "lineage_id": "", "minimum_directional_af_percent": 56.48, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_022014715.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.19, "aligned_fraction_reference_percent": 55.55, "ani_percent": 89.01, "lineage_id": "", "minimum_directional_af_percent": 51.19, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001521715.1", "reference_role": "type_anchor", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.29, "aligned_fraction_reference_percent": 57.32, "ani_percent": 89.01, "lineage_id": "", "minimum_directional_af_percent": 54.29, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_014490825.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 54.24, "aligned_fraction_reference_percent": 60.08, "ani_percent": 89.00, "lineage_id": "", "minimum_directional_af_percent": 54.24, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003964905.1", "reference_role": "type_anchor", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.57, "aligned_fraction_reference_percent": 57.00, "ani_percent": 88.98, "lineage_id": "", "minimum_directional_af_percent": 50.57, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_013784425.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.83, "aligned_fraction_reference_percent": 59.47, "ani_percent": 88.97, "lineage_id": "", "minimum_directional_af_percent": 52.83, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003594915.1", "reference_role": "type_anchor", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 53.30, "aligned_fraction_reference_percent": 55.74, "ani_percent": 88.96, "lineage_id": "", "minimum_directional_af_percent": 53.30, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_014490845.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 53.34, "aligned_fraction_reference_percent": 55.19, "ani_percent": 88.96, "lineage_id": "", "minimum_directional_af_percent": 53.34, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_047116295.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 55.76, "aligned_fraction_reference_percent": 56.70, "ani_percent": 88.95, "lineage_id": "", "minimum_directional_af_percent": 55.76, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_054382275.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.76, "aligned_fraction_reference_percent": 60.75, "ani_percent": 88.94, "lineage_id": "", "minimum_directional_af_percent": 55.76, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_025244905.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.97, "aligned_fraction_reference_percent": 52.17, "ani_percent": 88.91, "lineage_id": "", "minimum_directional_af_percent": 52.17, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_052569525.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.82, "aligned_fraction_reference_percent": 53.49, "ani_percent": 88.86, "lineage_id": "", "minimum_directional_af_percent": 50.82, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_009184765.2", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 55.14, "aligned_fraction_reference_percent": 60.32, "ani_percent": 88.85, "lineage_id": "", "minimum_directional_af_percent": 55.14, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_051517475.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.25, "aligned_fraction_reference_percent": 55.61, "ani_percent": 88.84, "lineage_id": "", "minimum_directional_af_percent": 52.25, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729805.1", "reference_role": "type_anchor", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 54.07, "aligned_fraction_reference_percent": 59.19, "ani_percent": 88.81, "lineage_id": "", "minimum_directional_af_percent": 54.07, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031851495.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.34, "aligned_fraction_reference_percent": 58.50, "ani_percent": 88.78, "lineage_id": "", "minimum_directional_af_percent": 55.34, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043973405.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.03, "aligned_fraction_reference_percent": 57.28, "ani_percent": 88.77, "lineage_id": "", "minimum_directional_af_percent": 50.03, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_008364625.2", "reference_role": "type_anchor", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.21, "aligned_fraction_reference_percent": 56.61, "ani_percent": 88.74, "lineage_id": "", "minimum_directional_af_percent": 52.21, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_021347605.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 52.86, "aligned_fraction_reference_percent": 56.44, "ani_percent": 88.72, "lineage_id": "", "minimum_directional_af_percent": 52.86, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_052974775.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 51.19, "aligned_fraction_reference_percent": 52.78, "ani_percent": 88.70, "lineage_id": "", "minimum_directional_af_percent": 51.19, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045866555.1", "reference_role": "diversity", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.81, "aligned_fraction_reference_percent": 55.42, "ani_percent": 88.63, "lineage_id": "", "minimum_directional_af_percent": 49.81, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004006055.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.68, "aligned_fraction_reference_percent": 49.26, "ani_percent": 88.63, "lineage_id": "", "minimum_directional_af_percent": 49.26, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_019968825.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 50.14, "aligned_fraction_reference_percent": 58.41, "ani_percent": 88.62, "lineage_id": "", "minimum_directional_af_percent": 50.14, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_009176645.1", "reference_role": "type_anchor", "species_id": "ECTX-SP015", "species_name": "Enterobacter oligotrophicus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.88, "aligned_fraction_reference_percent": 54.99, "ani_percent": 88.60, "lineage_id": "", "minimum_directional_af_percent": 49.88, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_030406165.1", "reference_role": "diversity", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.69, "aligned_fraction_reference_percent": 53.75, "ani_percent": 88.59, "lineage_id": "", "minimum_directional_af_percent": 52.69, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_025999975.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.03, "aligned_fraction_reference_percent": 54.53, "ani_percent": 88.59, "lineage_id": "", "minimum_directional_af_percent": 52.03, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053699365.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.28, "aligned_fraction_reference_percent": 58.68, "ani_percent": 88.58, "lineage_id": "", "minimum_directional_af_percent": 50.28, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_040834095.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.82, "aligned_fraction_reference_percent": 52.73, "ani_percent": 88.56, "lineage_id": "", "minimum_directional_af_percent": 49.82, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001729765.1", "reference_role": "type_anchor", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.82, "aligned_fraction_reference_percent": 54.79, "ani_percent": 88.56, "lineage_id": "", "minimum_directional_af_percent": 51.82, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_050847275.1", "reference_role": "diversity", "species_id": "ECTX-SP024", "species_name": "Enterobacter wuhouensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.77, "aligned_fraction_reference_percent": 50.31, "ani_percent": 88.55, "lineage_id": "", "minimum_directional_af_percent": 50.31, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_008931545.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.27, "aligned_fraction_reference_percent": 50.24, "ani_percent": 88.54, "lineage_id": "", "minimum_directional_af_percent": 50.24, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001984825.2", "reference_role": "type_anchor", "species_id": "ECTX-SP005", "species_name": "Enterobacter chengduensis", "subspecies_id": "ECTX-SS001", "subspecies_name": "Enterobacter chengduensis subsp. chengduensis" }, { "aligned_fraction_query_percent": 51.02, "aligned_fraction_reference_percent": 56.29, "ani_percent": 88.54, "lineage_id": "", "minimum_directional_af_percent": 51.02, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_043972695.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 49.50, "aligned_fraction_reference_percent": 54.75, "ani_percent": 88.54, "lineage_id": "", "minimum_directional_af_percent": 49.50, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045278755.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.80, "aligned_fraction_reference_percent": 56.11, "ani_percent": 88.53, "lineage_id": "", "minimum_directional_af_percent": 51.80, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_030406125.1", "reference_role": "diversity", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.44, "aligned_fraction_reference_percent": 56.72, "ani_percent": 88.53, "lineage_id": "", "minimum_directional_af_percent": 52.44, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_035835995.1", "reference_role": "diversity", "species_id": "ECTX-SP024", "species_name": "Enterobacter wuhouensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.06, "aligned_fraction_reference_percent": 56.50, "ani_percent": 88.52, "lineage_id": "", "minimum_directional_af_percent": 51.06, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_029542725.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 50.90, "aligned_fraction_reference_percent": 57.83, "ani_percent": 88.51, "lineage_id": "", "minimum_directional_af_percent": 50.90, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004355165.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.32, "aligned_fraction_reference_percent": 56.88, "ani_percent": 88.51, "lineage_id": "", "minimum_directional_af_percent": 51.32, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_040059225.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 51.36, "aligned_fraction_reference_percent": 52.64, "ani_percent": 88.51, "lineage_id": "", "minimum_directional_af_percent": 51.36, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_043971375.1", "reference_role": "diversity", "species_id": "ECTX-SP005", "species_name": "Enterobacter chengduensis", "subspecies_id": "ECTX-SS001", "subspecies_name": "Enterobacter chengduensis subsp. chengduensis" }, { "aligned_fraction_query_percent": 50.14, "aligned_fraction_reference_percent": 54.40, "ani_percent": 88.50, "lineage_id": "", "minimum_directional_af_percent": 50.14, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001039365.2", "reference_role": "type_anchor", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 50.97, "aligned_fraction_reference_percent": 55.24, "ani_percent": 88.49, "lineage_id": "", "minimum_directional_af_percent": 50.97, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_007035975.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 53.51, "aligned_fraction_reference_percent": 55.39, "ani_percent": 88.48, "lineage_id": "", "minimum_directional_af_percent": 53.51, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003594935.2", "reference_role": "type_anchor", "species_id": "ECTX-SP010", "species_name": "Enterobacter huaxiensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.63, "aligned_fraction_reference_percent": 56.26, "ani_percent": 88.48, "lineage_id": "", "minimum_directional_af_percent": 52.63, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_035556915.2", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.20, "aligned_fraction_reference_percent": 51.68, "ani_percent": 88.47, "lineage_id": "", "minimum_directional_af_percent": 51.20, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003665375.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.62, "aligned_fraction_reference_percent": 51.55, "ani_percent": 88.47, "lineage_id": "", "minimum_directional_af_percent": 49.62, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019968805.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.83, "aligned_fraction_reference_percent": 55.55, "ani_percent": 88.46, "lineage_id": "", "minimum_directional_af_percent": 52.83, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_000211415.1", "reference_role": "type_anchor", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.80, "aligned_fraction_reference_percent": 52.53, "ani_percent": 88.46, "lineage_id": "", "minimum_directional_af_percent": 49.80, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053698735.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.49, "aligned_fraction_reference_percent": 54.75, "ani_percent": 88.45, "lineage_id": "", "minimum_directional_af_percent": 51.49, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_034331165.2", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.01, "aligned_fraction_reference_percent": 54.36, "ani_percent": 88.43, "lineage_id": "", "minimum_directional_af_percent": 51.01, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004331265.1", "reference_role": "type_anchor", "species_id": "ECTX-SP024", "species_name": "Enterobacter wuhouensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.84, "aligned_fraction_reference_percent": 49.09, "ani_percent": 88.43, "lineage_id": "", "minimum_directional_af_percent": 49.09, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_015137465.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.41, "aligned_fraction_reference_percent": 48.57, "ani_percent": 88.41, "lineage_id": "", "minimum_directional_af_percent": 48.57, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_015135855.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.54, "aligned_fraction_reference_percent": 53.29, "ani_percent": 88.41, "lineage_id": "", "minimum_directional_af_percent": 50.54, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_034008275.1", "reference_role": "type_anchor", "species_id": "ECTX-SP005", "species_name": "Enterobacter chengduensis", "subspecies_id": "ECTX-SS002", "subspecies_name": "Enterobacter chengduensis subsp. rongchengensis" }, { "aligned_fraction_query_percent": 51.28, "aligned_fraction_reference_percent": 55.41, "ani_percent": 88.39, "lineage_id": "", "minimum_directional_af_percent": 51.28, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_002952735.2", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 51.03, "aligned_fraction_reference_percent": 54.70, "ani_percent": 88.38, "lineage_id": "", "minimum_directional_af_percent": 51.03, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_026420145.1", "reference_role": "type_anchor", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.73, "aligned_fraction_reference_percent": 56.24, "ani_percent": 88.37, "lineage_id": "", "minimum_directional_af_percent": 49.73, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_028735835.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 47.26, "aligned_fraction_reference_percent": 50.41, "ani_percent": 88.34, "lineage_id": "", "minimum_directional_af_percent": 47.26, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_002939185.1", "reference_role": "type_anchor", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 52.53, "aligned_fraction_reference_percent": 48.93, "ani_percent": 88.33, "lineage_id": "", "minimum_directional_af_percent": 48.93, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_000025565.1", "reference_role": "type_anchor", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 49.60, "aligned_fraction_reference_percent": 56.35, "ani_percent": 88.27, "lineage_id": "", "minimum_directional_af_percent": 49.60, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_008364555.1", "reference_role": "type_anchor", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 48.59, "aligned_fraction_reference_percent": 50.58, "ani_percent": 88.26, "lineage_id": "", "minimum_directional_af_percent": 48.59, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043964395.1", "reference_role": "diversity", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 51.29, "aligned_fraction_reference_percent": 48.38, "ani_percent": 88.23, "lineage_id": "", "minimum_directional_af_percent": 48.38, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053691555.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 48.02, "aligned_fraction_reference_percent": 50.74, "ani_percent": 88.14, "lineage_id": "", "minimum_directional_af_percent": 48.02, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_042434935.1", "reference_role": "diversity", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 47.35, "aligned_fraction_reference_percent": 52.41, "ani_percent": 88.12, "lineage_id": "", "minimum_directional_af_percent": 47.35, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_009036245.1", "reference_role": "diversity", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.60, "aligned_fraction_reference_percent": 52.59, "ani_percent": 88.02, "lineage_id": "", "minimum_directional_af_percent": 49.60, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_020540925.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 50.26, "aligned_fraction_reference_percent": 53.44, "ani_percent": 88.01, "lineage_id": "", "minimum_directional_af_percent": 50.26, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_046015535.2", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 50.14, "aligned_fraction_reference_percent": 49.78, "ani_percent": 88.00, "lineage_id": "", "minimum_directional_af_percent": 49.78, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043972705.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 49.10, "aligned_fraction_reference_percent": 52.85, "ani_percent": 87.99, "lineage_id": "", "minimum_directional_af_percent": 49.10, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_034008295.1", "reference_role": "type_anchor", "species_id": "ECTX-SP006", "species_name": "Enterobacter chinensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 49.47, "aligned_fraction_reference_percent": 52.10, "ani_percent": 87.97, "lineage_id": "", "minimum_directional_af_percent": 49.47, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_024599795.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 49.51, "aligned_fraction_reference_percent": 51.97, "ani_percent": 87.95, "lineage_id": "", "minimum_directional_af_percent": 49.51, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_000235765.3", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 49.24, "aligned_fraction_reference_percent": 53.07, "ani_percent": 87.91, "lineage_id": "", "minimum_directional_af_percent": 49.24, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_009660455.1", "reference_role": "type_anchor", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 49.01, "aligned_fraction_reference_percent": 53.24, "ani_percent": 87.90, "lineage_id": "", "minimum_directional_af_percent": 49.01, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_040892575.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 49.58, "aligned_fraction_reference_percent": 53.26, "ani_percent": 87.89, "lineage_id": "", "minimum_directional_af_percent": 49.58, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031851625.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 50.18, "aligned_fraction_reference_percent": 52.28, "ani_percent": 87.87, "lineage_id": "", "minimum_directional_af_percent": 50.18, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_016864115.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 50.35, "aligned_fraction_reference_percent": 51.61, "ani_percent": 87.85, "lineage_id": "", "minimum_directional_af_percent": 50.35, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_002303275.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 51.45, "aligned_fraction_reference_percent": 53.41, "ani_percent": 87.84, "lineage_id": "", "minimum_directional_af_percent": 51.45, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_905331265.2", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 43.41, "aligned_fraction_reference_percent": 46.82, "ani_percent": 87.77, "lineage_id": "", "minimum_directional_af_percent": 43.41, "name_status": "provisional_name_not_validly_published", "reference_id": "primary_whole:GCA_023023105.1", "reference_role": "diversity", "species_id": "ECTX-SP001", "species_name": "Enterobacter adelaidei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 47.09, "aligned_fraction_reference_percent": 50.52, "ani_percent": 87.67, "lineage_id": "", "minimum_directional_af_percent": 47.09, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043647335.2", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 46.35, "aligned_fraction_reference_percent": 48.83, "ani_percent": 87.58, "lineage_id": "", "minimum_directional_af_percent": 46.35, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_035323105.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 45.84, "aligned_fraction_reference_percent": 49.58, "ani_percent": 87.55, "lineage_id": "", "minimum_directional_af_percent": 45.84, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019047785.1", "reference_role": "type_anchor", "species_id": "ECTX-SP004", "species_name": "Enterobacter cancerogenus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 46.99, "aligned_fraction_reference_percent": 49.17, "ani_percent": 87.54, "lineage_id": "", "minimum_directional_af_percent": 46.99, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_050626905.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 46.59, "aligned_fraction_reference_percent": 49.06, "ani_percent": 87.52, "lineage_id": "", "minimum_directional_af_percent": 46.59, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001750725.1", "reference_role": "type_anchor", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 44.30, "aligned_fraction_reference_percent": 48.16, "ani_percent": 87.47, "lineage_id": "", "minimum_directional_af_percent": 44.30, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_002850575.1", "reference_role": "diversity", "species_id": "ECTX-SP004", "species_name": "Enterobacter cancerogenus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 46.34, "aligned_fraction_reference_percent": 48.36, "ani_percent": 87.47, "lineage_id": "", "minimum_directional_af_percent": 46.34, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031851515.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 45.96, "aligned_fraction_reference_percent": 51.13, "ani_percent": 87.41, "lineage_id": "", "minimum_directional_af_percent": 45.96, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_029718255.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 45.84, "aligned_fraction_reference_percent": 49.29, "ani_percent": 87.34, "lineage_id": "", "minimum_directional_af_percent": 45.84, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003071645.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 46.83, "aligned_fraction_reference_percent": 49.78, "ani_percent": 87.34, "lineage_id": "", "minimum_directional_af_percent": 46.83, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_029721015.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 44.35, "aligned_fraction_reference_percent": 46.87, "ani_percent": 87.27, "lineage_id": "", "minimum_directional_af_percent": 44.35, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_904425455.1", "reference_role": "diversity", "species_id": "ECTX-SP004", "species_name": "Enterobacter cancerogenus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 40.54, "aligned_fraction_reference_percent": 43.22, "ani_percent": 86.90, "lineage_id": "", "minimum_directional_af_percent": 40.54, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_025152625.1", "reference_role": "diversity", "species_id": "ECTX-SP022", "species_name": "Enterobacter soli", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 40.65, "aligned_fraction_reference_percent": 42.75, "ani_percent": 86.27, "lineage_id": "", "minimum_directional_af_percent": 40.65, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001654845.1", "reference_role": "type_anchor", "species_id": "ECTX-SP022", "species_name": "Enterobacter soli", "subspecies_id": "", "subspecies_name": "" } ], "raw_hit_count": 140, "record_type": "development_evidence_only", "reference_count": 140, "schema_version": "2.0.0-dev-evidence", "unique_hit_count": 140, "units": { "aligned_fraction": "percent", "ani": "percent" } }, "execution": { "stage": "genomovar", "status": "complete" }, "external_problem_warnings": [], "genomovar": { "approval": { "accepted_addendum_sha256": "1616c88a4be5193b8e54b6ce3ec27fcee19d731dd375c2e7ad4c989db429df4f", "base_contract_sha256": "ae3eacf1a708a4c0fac18d81dc46df73c183d84accad4dd52e1c4a43de7e1b03", "by": "Michael", "date": "2026-10-08", "decision": "Q-GV-AF-01 option A", "source": "https://github.com/mbhall88/Enterobacter/issues/3#issuecomment-6056920803", "status": "approved" }, "compatible_groups": [ "ECTX-GV-2026-10-02-v1-GV10" ], "definition": { "group_count": 25, "member_count": 173, "membership_sha256": "1a2202dde4e0afcf78a89c1e6c084563169bd5cdea0f102da8113b1a87ebf0ab", "version": "2026-10-02-v1" }, "genomovar_id": "ECTX-GV-2026-10-02-v1-GV10", "groups": [ { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_000750225.1", "genomovar_chromosome:GCA_000750275.1", "genomovar_chromosome:GCA_000784905.1", "genomovar_chromosome:GCA_014117285.1", "genomovar_chromosome:GCA_016864035.1", "genomovar_chromosome:GCA_021869625.1", "genomovar_chromosome:GCA_021869665.1", "genomovar_chromosome:GCA_038069265.2", "genomovar_chromosome:GCA_041005825.1", "genomovar_chromosome:GCA_048388455.1", "genomovar_chromosome:GCA_050162345.1", "genomovar_chromosome:GCA_050245065.1", "genomovar_chromosome:GCA_050871245.1", "genomovar_chromosome:GCA_051092825.1", "genomovar_chromosome:GCA_051093565.1", "genomovar_chromosome:GCA_052713485.2", "genomovar_chromosome:GCA_052922205.1" ], "group": "ECTX-GV-2026-10-02-v1-GV01", "minimum_af_query_percent": 83.64, "minimum_af_reference_percent": 90.09, "minimum_ani_percent": 98.80, "missing": [], "observed": 17, "required": 17, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_001729745.1" ], "group": "ECTX-GV-2026-10-02-v1-GV02", "minimum_af_query_percent": 82.43, "minimum_af_reference_percent": 94.54, "minimum_ani_percent": 99.08, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_002201815.1", "genomovar_chromosome:GCA_003031445.1", "genomovar_chromosome:GCA_009834325.1", "genomovar_chromosome:GCA_010319625.1", "genomovar_chromosome:GCA_013625795.1", "genomovar_chromosome:GCA_017161605.1", "genomovar_chromosome:GCA_017161725.1", "genomovar_chromosome:GCA_017161745.1", "genomovar_chromosome:GCA_017161765.1", "genomovar_chromosome:GCA_017161785.1", "genomovar_chromosome:GCA_017161805.1", "genomovar_chromosome:GCA_017161825.1", "genomovar_chromosome:GCA_017161845.1", "genomovar_chromosome:GCA_017161865.1", "genomovar_chromosome:GCA_021397695.1", "genomovar_chromosome:GCA_021398115.1", "genomovar_chromosome:GCA_021725435.1", "genomovar_chromosome:GCA_023734795.1", "genomovar_chromosome:GCA_023734815.1", "genomovar_chromosome:GCA_023734835.1", "genomovar_chromosome:GCA_023734855.1", "genomovar_chromosome:GCA_023734875.1", "genomovar_chromosome:GCA_023734895.1", "genomovar_chromosome:GCA_023734915.1", "genomovar_chromosome:GCA_023734935.1", "genomovar_chromosome:GCA_023734955.1", "genomovar_chromosome:GCA_023734975.1", "genomovar_chromosome:GCA_023734995.1", "genomovar_chromosome:GCA_023735015.1", "genomovar_chromosome:GCA_023735035.1", "genomovar_chromosome:GCA_023735055.1", "genomovar_chromosome:GCA_023735075.1", "genomovar_chromosome:GCA_023735155.1", "genomovar_chromosome:GCA_023735195.1", "genomovar_chromosome:GCA_023735215.1", "genomovar_chromosome:GCA_023735235.1", "genomovar_chromosome:GCA_023735255.1", "genomovar_chromosome:GCA_023735275.1", "genomovar_chromosome:GCA_023735295.1", "genomovar_chromosome:GCA_023735315.1", "genomovar_chromosome:GCA_023735335.1", "genomovar_chromosome:GCA_023735355.1", "genomovar_chromosome:GCA_023735375.1", "genomovar_chromosome:GCA_023735395.1", "genomovar_chromosome:GCA_023735435.1", "genomovar_chromosome:GCA_024182005.1", "genomovar_chromosome:GCA_024182025.1", "genomovar_chromosome:GCA_025266795.1", "genomovar_chromosome:GCA_028898905.1", "genomovar_chromosome:GCA_029069385.2", "genomovar_chromosome:GCA_029069865.2", "genomovar_chromosome:GCA_029070145.2", "genomovar_chromosome:GCA_029070185.2", "genomovar_chromosome:GCA_029075215.2", "genomovar_chromosome:GCA_029075265.2", "genomovar_chromosome:GCA_030847805.1", "genomovar_chromosome:GCA_038627095.2", "genomovar_chromosome:GCA_041005335.1", "genomovar_chromosome:GCA_041378885.1", "genomovar_chromosome:GCA_041378905.1", "genomovar_chromosome:GCA_041378915.1", "genomovar_chromosome:GCA_041378925.1", "genomovar_chromosome:GCA_041410215.1", "genomovar_chromosome:GCA_043967495.1", "genomovar_chromosome:GCA_043968025.1", "genomovar_chromosome:GCA_043969345.1", "genomovar_chromosome:GCA_043969365.1", "genomovar_chromosome:GCA_043970705.1", "genomovar_chromosome:GCA_043972045.1", "genomovar_chromosome:GCA_043974645.1", "genomovar_chromosome:GCA_046097125.1", "genomovar_chromosome:GCA_048568405.1", "genomovar_chromosome:GCA_048572805.1", "genomovar_chromosome:GCA_050163215.1", "genomovar_chromosome:GCA_050871235.1", "genomovar_chromosome:GCA_052073395.1", "genomovar_chromosome:GCA_052073625.1", "genomovar_chromosome:GCA_052412295.1", "genomovar_chromosome:GCA_052569335.1", "genomovar_chromosome:GCA_052982315.1", "genomovar_chromosome:GCA_052982375.1", "genomovar_chromosome:GCA_054053545.1", "genomovar_chromosome:GCA_905231985.2", "genomovar_chromosome:GCA_905232035.2", "genomovar_chromosome:GCA_905232455.2", "genomovar_chromosome:GCA_905232525.2", "genomovar_chromosome:GCA_905232845.2", "genomovar_chromosome:GCA_905233055.2", "genomovar_chromosome:GCA_905322485.2", "genomovar_chromosome:GCA_905322515.2", "genomovar_chromosome:GCA_905329655.2", "genomovar_chromosome:GCA_905330775.2" ], "group": "ECTX-GV-2026-10-02-v1-GV03", "minimum_af_query_percent": 82.96, "minimum_af_reference_percent": 85.99, "minimum_ani_percent": 98.73, "missing": [], "observed": 92, "required": 92, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_002968455.1" ], "group": "ECTX-GV-2026-10-02-v1-GV04", "minimum_af_query_percent": 84.57, "minimum_af_reference_percent": 90.98, "minimum_ani_percent": 98.86, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_003051945.2", "genomovar_chromosome:GCA_008931525.1", "genomovar_chromosome:GCA_013629235.1", "genomovar_chromosome:GCA_013629675.1", "genomovar_chromosome:GCA_013635255.1", "genomovar_chromosome:GCA_030411175.2", "genomovar_chromosome:GCA_040096145.1", "genomovar_chromosome:GCA_041004285.1", "genomovar_chromosome:GCA_047798645.1", "genomovar_chromosome:GCA_048572775.1", "genomovar_chromosome:GCA_048572795.1", "genomovar_chromosome:GCA_049668135.1", "genomovar_chromosome:GCA_050157245.1", "genomovar_chromosome:GCA_050157255.1", "genomovar_chromosome:GCA_053691715.1" ], "group": "ECTX-GV-2026-10-02-v1-GV05", "minimum_af_query_percent": 82.04, "minimum_af_reference_percent": 88.88, "minimum_ani_percent": 98.75, "missing": [], "observed": 15, "required": 15, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_004118875.1", "genomovar_chromosome:GCA_016745355.1", "genomovar_chromosome:GCA_029962545.1", "genomovar_chromosome:GCA_038627045.2", "genomovar_chromosome:GCA_049102985.2", "genomovar_chromosome:GCA_050245235.1" ], "group": "ECTX-GV-2026-10-02-v1-GV06", "minimum_af_query_percent": 84.28, "minimum_af_reference_percent": 91.17, "minimum_ani_percent": 98.86, "missing": [], "observed": 6, "required": 6, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_009738085.1" ], "group": "ECTX-GV-2026-10-02-v1-GV07", "minimum_af_query_percent": 87.09, "minimum_af_reference_percent": 90.50, "minimum_ani_percent": 98.97, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_012974405.1", "genomovar_chromosome:GCA_019048625.1", "genomovar_chromosome:GCA_029721335.1" ], "group": "ECTX-GV-2026-10-02-v1-GV08", "minimum_af_query_percent": 81.33, "minimum_af_reference_percent": 89.16, "minimum_ani_percent": 98.86, "missing": [], "observed": 3, "required": 3, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_013375955.1", "genomovar_chromosome:GCA_030848025.1", "genomovar_chromosome:GCA_036687415.1", "genomovar_chromosome:GCA_052921675.1" ], "group": "ECTX-GV-2026-10-02-v1-GV09", "minimum_af_query_percent": 83.44, "minimum_af_reference_percent": 88.91, "minimum_ani_percent": 98.86, "missing": [], "observed": 4, "required": 4, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [], "group": "ECTX-GV-2026-10-02-v1-GV10", "minimum_af_query_percent": 86.73, "minimum_af_reference_percent": 93.27, "minimum_ani_percent": 99.68, "missing": [], "observed": 12, "required": 12, "state": "compatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_013625435.1", "genomovar_chromosome:GCA_050239815.1" ], "group": "ECTX-GV-2026-10-02-v1-GV11", "minimum_af_query_percent": 83.64, "minimum_af_reference_percent": 90.75, "minimum_ani_percent": 98.90, "missing": [], "observed": 2, "required": 2, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_013629455.1" ], "group": "ECTX-GV-2026-10-02-v1-GV12", "minimum_af_query_percent": 85.46, "minimum_af_reference_percent": 88.05, "minimum_ani_percent": 98.48, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_013635495.1", "genomovar_chromosome:GCA_050161365.1", "genomovar_chromosome:GCA_050165125.1", "genomovar_chromosome:GCA_050165795.1", "genomovar_chromosome:GCA_050166045.1" ], "group": "ECTX-GV-2026-10-02-v1-GV13", "minimum_af_query_percent": 83.30, "minimum_af_reference_percent": 88.74, "minimum_ani_percent": 98.86, "missing": [], "observed": 5, "required": 5, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_013873515.1", "genomovar_chromosome:GCA_905331365.2" ], "group": "ECTX-GV-2026-10-02-v1-GV14", "minimum_af_query_percent": 82.74, "minimum_af_reference_percent": 92.09, "minimum_ani_percent": 98.97, "missing": [], "observed": 2, "required": 2, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_027595125.1" ], "group": "ECTX-GV-2026-10-02-v1-GV15", "minimum_af_query_percent": 83.06, "minimum_af_reference_percent": 91.20, "minimum_ani_percent": 98.92, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_031165635.1" ], "group": "ECTX-GV-2026-10-02-v1-GV16", "minimum_af_query_percent": 83.30, "minimum_af_reference_percent": 92.27, "minimum_ani_percent": 98.92, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_035323065.1" ], "group": "ECTX-GV-2026-10-02-v1-GV17", "minimum_af_query_percent": 82.76, "minimum_af_reference_percent": 92.51, "minimum_ani_percent": 99.03, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_035323845.1" ], "group": "ECTX-GV-2026-10-02-v1-GV18", "minimum_af_query_percent": 82.56, "minimum_af_reference_percent": 93.79, "minimum_ani_percent": 99.03, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_041004125.1" ], "group": "ECTX-GV-2026-10-02-v1-GV19", "minimum_af_query_percent": 84.52, "minimum_af_reference_percent": 93.22, "minimum_ani_percent": 99.02, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_041004465.1" ], "group": "ECTX-GV-2026-10-02-v1-GV20", "minimum_af_query_percent": 83.61, "minimum_af_reference_percent": 94.06, "minimum_ani_percent": 98.97, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_044792965.1" ], "group": "ECTX-GV-2026-10-02-v1-GV21", "minimum_af_query_percent": 81.97, "minimum_af_reference_percent": 92.40, "minimum_ani_percent": 98.81, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_050186865.1" ], "group": "ECTX-GV-2026-10-02-v1-GV22", "minimum_af_query_percent": 83.89, "minimum_af_reference_percent": 90.83, "minimum_ani_percent": 98.86, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_050260315.1" ], "group": "ECTX-GV-2026-10-02-v1-GV23", "minimum_af_query_percent": 82.62, "minimum_af_reference_percent": 93.72, "minimum_ani_percent": 99.08, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_051089665.1" ], "group": "ECTX-GV-2026-10-02-v1-GV24", "minimum_af_query_percent": 84.24, "minimum_af_reference_percent": 93.65, "minimum_ani_percent": 98.97, "missing": [], "observed": 1, "required": 1, "state": "incompatible" }, { "below_member_af": [], "below_threshold": [ "genomovar_chromosome:GCA_900635705.1" ], "group": "ECTX-GV-2026-10-02-v1-GV25", "minimum_af_query_percent": 82.10, "minimum_af_reference_percent": 94.06, "minimum_ani_percent": 99.03, "missing": [], "observed": 1, "required": 1, "state": "incompatible" } ], "incomplete_groups": [], "parent": { "blocking_reasons": [], "policy_id": "conservative-assembly-anim-v2", "policy_sha256": "4bf50abd9600250d5c66a3d0ddb94a70a4c88326a95a386c72a2a947dc053705", "query_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "result_sha256": "c51fc35e2019d8dd51f66434bf5354650c78c917cea04e876e10518b14125bee", "scope_outcome": "not_assessed", "species_id": "ECTX-SP025", "status": "assigned", "subspecies_id": "ECTX-SS007", "verified": true }, "policy_id": "p3a-genomovar-contract-r1", "policy_sha256": "2be813fc55756bd819aff0626a59063b4842f3fa86ec9a4cd9e80e276dc80185", "reasons": [], "rule": { "ani_minimum_percent": 99.50, "both_af_minimum_percent": 80.00, "every_member": true, "rival_exclusion": "measured_below_threshold_member" }, "search": { "adapter_verified": true, "component_id": "genomovar_chromosome", "diagnostic_exclusion": false, "engine": "skani", "engine_profile": "skani-0.3.2-avx2-content-order-dna-v2", "engine_revision": "22da4ae9e44b2e3e686c8e5c71fcd16cec2b9791", "engine_version": "0.3.2", "input_kind": "assembly", "member_evidence": [ { "aligned_fraction_query_percent": 94.71, "aligned_fraction_reference_percent": 100.00, "ani_percent": 100.00, "reference_id": "genomovar_chromosome:GCA_013738375.1" }, { "aligned_fraction_query_percent": 86.73, "aligned_fraction_reference_percent": 94.67, "ani_percent": 99.91, "reference_id": "genomovar_chromosome:GCA_013740655.1" }, { "aligned_fraction_query_percent": 87.52, "aligned_fraction_reference_percent": 95.07, "ani_percent": 99.89, "reference_id": "genomovar_chromosome:GCA_013625115.1" }, { "aligned_fraction_query_percent": 88.32, "aligned_fraction_reference_percent": 96.28, "ani_percent": 99.85, "reference_id": "genomovar_chromosome:GCA_905338035.2" }, { "aligned_fraction_query_percent": 88.35, "aligned_fraction_reference_percent": 93.27, "ani_percent": 99.78, "reference_id": "genomovar_chromosome:GCA_013624995.1" }, { "aligned_fraction_query_percent": 88.72, "aligned_fraction_reference_percent": 94.99, "ani_percent": 99.78, "reference_id": "genomovar_chromosome:GCA_013734915.1" }, { "aligned_fraction_query_percent": 89.84, "aligned_fraction_reference_percent": 93.62, "ani_percent": 99.78, "reference_id": "genomovar_chromosome:GCA_013736395.1" }, { "aligned_fraction_query_percent": 87.80, "aligned_fraction_reference_percent": 95.10, "ani_percent": 99.78, "reference_id": "genomovar_chromosome:GCA_013742375.1" }, { "aligned_fraction_query_percent": 89.07, "aligned_fraction_reference_percent": 94.44, "ani_percent": 99.73, "reference_id": "genomovar_chromosome:GCA_013739595.1" }, { "aligned_fraction_query_percent": 90.29, "aligned_fraction_reference_percent": 94.56, "ani_percent": 99.72, "reference_id": "genomovar_chromosome:GCA_013733565.1" }, { "aligned_fraction_query_percent": 90.45, "aligned_fraction_reference_percent": 93.72, "ani_percent": 99.71, "reference_id": "genomovar_chromosome:GCA_013734275.1" }, { "aligned_fraction_query_percent": 88.41, "aligned_fraction_reference_percent": 94.77, "ani_percent": 99.68, "reference_id": "genomovar_chromosome:GCA_013624605.1" }, { "aligned_fraction_query_percent": 84.00, "aligned_fraction_reference_percent": 92.97, "ani_percent": 99.14, "reference_id": "genomovar_chromosome:GCA_013625795.1" }, { "aligned_fraction_query_percent": 83.69, "aligned_fraction_reference_percent": 94.20, "ani_percent": 99.09, "reference_id": "genomovar_chromosome:GCA_000750225.1" }, { "aligned_fraction_query_percent": 83.64, "aligned_fraction_reference_percent": 94.27, "ani_percent": 99.09, "reference_id": "genomovar_chromosome:GCA_000784905.1" }, { "aligned_fraction_query_percent": 84.30, "aligned_fraction_reference_percent": 94.43, "ani_percent": 99.09, "reference_id": "genomovar_chromosome:GCA_023735195.1" }, { "aligned_fraction_query_percent": 82.04, "aligned_fraction_reference_percent": 92.83, "ani_percent": 99.09, "reference_id": "genomovar_chromosome:GCA_041004285.1" }, { "aligned_fraction_query_percent": 84.20, "aligned_fraction_reference_percent": 94.08, "ani_percent": 99.09, "reference_id": "genomovar_chromosome:GCA_905322515.2" }, { "aligned_fraction_query_percent": 82.43, "aligned_fraction_reference_percent": 94.54, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_001729745.1" }, { "aligned_fraction_query_percent": 83.54, "aligned_fraction_reference_percent": 94.72, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_012974405.1" }, { "aligned_fraction_query_percent": 84.63, "aligned_fraction_reference_percent": 94.36, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_023734815.1" }, { "aligned_fraction_query_percent": 84.24, "aligned_fraction_reference_percent": 93.70, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_023734895.1" }, { "aligned_fraction_query_percent": 84.22, "aligned_fraction_reference_percent": 93.69, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_023735375.1" }, { "aligned_fraction_query_percent": 84.24, "aligned_fraction_reference_percent": 93.74, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_023735395.1" }, { "aligned_fraction_query_percent": 84.16, "aligned_fraction_reference_percent": 94.71, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_046097125.1" }, { "aligned_fraction_query_percent": 82.62, "aligned_fraction_reference_percent": 93.72, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_050260315.1" }, { "aligned_fraction_query_percent": 84.21, "aligned_fraction_reference_percent": 94.55, "ani_percent": 99.08, "reference_id": "genomovar_chromosome:GCA_905232035.2" }, { "aligned_fraction_query_percent": 84.48, "aligned_fraction_reference_percent": 92.99, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_017161605.1" }, { "aligned_fraction_query_percent": 84.48, "aligned_fraction_reference_percent": 93.00, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_017161745.1" }, { "aligned_fraction_query_percent": 84.46, "aligned_fraction_reference_percent": 92.97, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_017161805.1" }, { "aligned_fraction_query_percent": 84.47, "aligned_fraction_reference_percent": 93.63, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_017161825.1" }, { "aligned_fraction_query_percent": 84.48, "aligned_fraction_reference_percent": 93.00, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_017161845.1" }, { "aligned_fraction_query_percent": 84.47, "aligned_fraction_reference_percent": 93.63, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_017161865.1" }, { "aligned_fraction_query_percent": 84.40, "aligned_fraction_reference_percent": 92.43, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_021869625.1" }, { "aligned_fraction_query_percent": 84.45, "aligned_fraction_reference_percent": 92.57, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_021869665.1" }, { "aligned_fraction_query_percent": 84.11, "aligned_fraction_reference_percent": 92.30, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_023735015.1" }, { "aligned_fraction_query_percent": 83.67, "aligned_fraction_reference_percent": 94.29, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_029075265.2" }, { "aligned_fraction_query_percent": 82.56, "aligned_fraction_reference_percent": 94.97, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_029721335.1" }, { "aligned_fraction_query_percent": 82.76, "aligned_fraction_reference_percent": 92.51, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_035323065.1" }, { "aligned_fraction_query_percent": 82.56, "aligned_fraction_reference_percent": 93.79, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_035323845.1" }, { "aligned_fraction_query_percent": 84.27, "aligned_fraction_reference_percent": 91.67, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_041005825.1" }, { "aligned_fraction_query_percent": 84.37, "aligned_fraction_reference_percent": 91.83, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_051093565.1" }, { "aligned_fraction_query_percent": 83.79, "aligned_fraction_reference_percent": 91.52, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_053691715.1" }, { "aligned_fraction_query_percent": 82.10, "aligned_fraction_reference_percent": 94.06, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_900635705.1" }, { "aligned_fraction_query_percent": 84.34, "aligned_fraction_reference_percent": 90.73, "ani_percent": 99.03, "reference_id": "genomovar_chromosome:GCA_905232525.2" }, { "aligned_fraction_query_percent": 83.72, "aligned_fraction_reference_percent": 94.48, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_000750275.1" }, { "aligned_fraction_query_percent": 84.15, "aligned_fraction_reference_percent": 93.36, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_002201815.1" }, { "aligned_fraction_query_percent": 83.68, "aligned_fraction_reference_percent": 91.49, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_013629235.1" }, { "aligned_fraction_query_percent": 82.74, "aligned_fraction_reference_percent": 93.81, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_013873515.1" }, { "aligned_fraction_query_percent": 84.44, "aligned_fraction_reference_percent": 92.93, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_017161725.1" }, { "aligned_fraction_query_percent": 84.51, "aligned_fraction_reference_percent": 93.61, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_017161785.1" }, { "aligned_fraction_query_percent": 84.65, "aligned_fraction_reference_percent": 92.97, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_023734855.1" }, { "aligned_fraction_query_percent": 84.16, "aligned_fraction_reference_percent": 92.24, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_023735235.1" }, { "aligned_fraction_query_percent": 85.00, "aligned_fraction_reference_percent": 93.75, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_023735255.1" }, { "aligned_fraction_query_percent": 84.70, "aligned_fraction_reference_percent": 94.01, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_023735355.1" }, { "aligned_fraction_query_percent": 84.34, "aligned_fraction_reference_percent": 92.24, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_028898905.1" }, { "aligned_fraction_query_percent": 84.60, "aligned_fraction_reference_percent": 93.54, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_029962545.1" }, { "aligned_fraction_query_percent": 84.52, "aligned_fraction_reference_percent": 93.22, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_041004125.1" }, { "aligned_fraction_query_percent": 83.48, "aligned_fraction_reference_percent": 91.26, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_048572795.1" }, { "aligned_fraction_query_percent": 84.20, "aligned_fraction_reference_percent": 89.59, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_050157245.1" }, { "aligned_fraction_query_percent": 84.15, "aligned_fraction_reference_percent": 92.52, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_052982375.1" }, { "aligned_fraction_query_percent": 85.12, "aligned_fraction_reference_percent": 94.13, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_905322485.2" }, { "aligned_fraction_query_percent": 84.32, "aligned_fraction_reference_percent": 90.44, "ani_percent": 99.02, "reference_id": "genomovar_chromosome:GCA_905330775.2" }, { "aligned_fraction_query_percent": 84.77, "aligned_fraction_reference_percent": 85.99, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_003031445.1" }, { "aligned_fraction_query_percent": 87.09, "aligned_fraction_reference_percent": 90.50, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_009738085.1" }, { "aligned_fraction_query_percent": 85.11, "aligned_fraction_reference_percent": 91.61, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_009834325.1" }, { "aligned_fraction_query_percent": 84.12, "aligned_fraction_reference_percent": 93.56, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_010319625.1" }, { "aligned_fraction_query_percent": 83.64, "aligned_fraction_reference_percent": 90.75, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_013625435.1" }, { "aligned_fraction_query_percent": 84.70, "aligned_fraction_reference_percent": 93.86, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_016864035.1" }, { "aligned_fraction_query_percent": 84.39, "aligned_fraction_reference_percent": 93.88, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_017161765.1" }, { "aligned_fraction_query_percent": 84.95, "aligned_fraction_reference_percent": 93.80, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023734795.1" }, { "aligned_fraction_query_percent": 84.73, "aligned_fraction_reference_percent": 92.31, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023734915.1" }, { "aligned_fraction_query_percent": 84.74, "aligned_fraction_reference_percent": 92.36, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023734995.1" }, { "aligned_fraction_query_percent": 84.72, "aligned_fraction_reference_percent": 92.34, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023735035.1" }, { "aligned_fraction_query_percent": 84.64, "aligned_fraction_reference_percent": 92.94, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023735055.1" }, { "aligned_fraction_query_percent": 84.67, "aligned_fraction_reference_percent": 92.23, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023735075.1" }, { "aligned_fraction_query_percent": 85.24, "aligned_fraction_reference_percent": 93.59, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023735295.1" }, { "aligned_fraction_query_percent": 84.74, "aligned_fraction_reference_percent": 93.05, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_023735315.1" }, { "aligned_fraction_query_percent": 84.48, "aligned_fraction_reference_percent": 92.89, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_024182005.1" }, { "aligned_fraction_query_percent": 84.48, "aligned_fraction_reference_percent": 93.83, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_029069865.2" }, { "aligned_fraction_query_percent": 83.97, "aligned_fraction_reference_percent": 94.29, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_029070145.2" }, { "aligned_fraction_query_percent": 83.96, "aligned_fraction_reference_percent": 94.29, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_029075215.2" }, { "aligned_fraction_query_percent": 83.62, "aligned_fraction_reference_percent": 92.42, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_030847805.1" }, { "aligned_fraction_query_percent": 84.02, "aligned_fraction_reference_percent": 92.64, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_038627095.2" }, { "aligned_fraction_query_percent": 83.61, "aligned_fraction_reference_percent": 94.06, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_041004465.1" }, { "aligned_fraction_query_percent": 85.04, "aligned_fraction_reference_percent": 91.49, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_041378905.1" }, { "aligned_fraction_query_percent": 85.01, "aligned_fraction_reference_percent": 90.96, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_043967495.1" }, { "aligned_fraction_query_percent": 84.68, "aligned_fraction_reference_percent": 90.06, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_043969365.1" }, { "aligned_fraction_query_percent": 85.11, "aligned_fraction_reference_percent": 91.04, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_043970705.1" }, { "aligned_fraction_query_percent": 85.09, "aligned_fraction_reference_percent": 91.04, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_043972045.1" }, { "aligned_fraction_query_percent": 84.72, "aligned_fraction_reference_percent": 93.57, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_043974645.1" }, { "aligned_fraction_query_percent": 82.98, "aligned_fraction_reference_percent": 91.25, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_047798645.1" }, { "aligned_fraction_query_percent": 84.36, "aligned_fraction_reference_percent": 93.22, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_048568405.1" }, { "aligned_fraction_query_percent": 84.06, "aligned_fraction_reference_percent": 91.28, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_048572775.1" }, { "aligned_fraction_query_percent": 83.98, "aligned_fraction_reference_percent": 91.19, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_049668135.1" }, { "aligned_fraction_query_percent": 84.27, "aligned_fraction_reference_percent": 92.71, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_050162345.1" }, { "aligned_fraction_query_percent": 84.25, "aligned_fraction_reference_percent": 95.34, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_050163215.1" }, { "aligned_fraction_query_percent": 83.54, "aligned_fraction_reference_percent": 92.46, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_050165795.1" }, { "aligned_fraction_query_percent": 84.24, "aligned_fraction_reference_percent": 93.65, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_051089665.1" }, { "aligned_fraction_query_percent": 84.37, "aligned_fraction_reference_percent": 91.39, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_051092825.1" }, { "aligned_fraction_query_percent": 84.13, "aligned_fraction_reference_percent": 92.26, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_052569335.1" }, { "aligned_fraction_query_percent": 84.76, "aligned_fraction_reference_percent": 91.60, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_052713485.2" }, { "aligned_fraction_query_percent": 85.14, "aligned_fraction_reference_percent": 92.02, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_052922205.1" }, { "aligned_fraction_query_percent": 84.15, "aligned_fraction_reference_percent": 92.52, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_052982315.1" }, { "aligned_fraction_query_percent": 84.16, "aligned_fraction_reference_percent": 92.53, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_054053545.1" }, { "aligned_fraction_query_percent": 84.78, "aligned_fraction_reference_percent": 93.25, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_905232455.2" }, { "aligned_fraction_query_percent": 84.44, "aligned_fraction_reference_percent": 93.28, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_905233055.2" }, { "aligned_fraction_query_percent": 84.42, "aligned_fraction_reference_percent": 93.26, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_905329655.2" }, { "aligned_fraction_query_percent": 82.87, "aligned_fraction_reference_percent": 92.09, "ani_percent": 98.97, "reference_id": "genomovar_chromosome:GCA_905331365.2" }, { "aligned_fraction_query_percent": 84.79, "aligned_fraction_reference_percent": 91.17, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_004118875.1" }, { "aligned_fraction_query_percent": 83.63, "aligned_fraction_reference_percent": 90.97, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_013635255.1" }, { "aligned_fraction_query_percent": 84.45, "aligned_fraction_reference_percent": 93.96, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_016745355.1" }, { "aligned_fraction_query_percent": 84.38, "aligned_fraction_reference_percent": 93.34, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_021725435.1" }, { "aligned_fraction_query_percent": 85.08, "aligned_fraction_reference_percent": 93.90, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023734875.1" }, { "aligned_fraction_query_percent": 84.80, "aligned_fraction_reference_percent": 92.42, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023734935.1" }, { "aligned_fraction_query_percent": 85.29, "aligned_fraction_reference_percent": 93.38, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023734955.1" }, { "aligned_fraction_query_percent": 85.29, "aligned_fraction_reference_percent": 93.46, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023735155.1" }, { "aligned_fraction_query_percent": 85.23, "aligned_fraction_reference_percent": 93.40, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023735215.1" }, { "aligned_fraction_query_percent": 85.23, "aligned_fraction_reference_percent": 93.40, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023735275.1" }, { "aligned_fraction_query_percent": 84.80, "aligned_fraction_reference_percent": 91.89, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023735335.1" }, { "aligned_fraction_query_percent": 84.46, "aligned_fraction_reference_percent": 92.96, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_023735435.1" }, { "aligned_fraction_query_percent": 84.50, "aligned_fraction_reference_percent": 93.46, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_025266795.1" }, { "aligned_fraction_query_percent": 83.06, "aligned_fraction_reference_percent": 91.20, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_027595125.1" }, { "aligned_fraction_query_percent": 84.39, "aligned_fraction_reference_percent": 93.75, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_029069385.2" }, { "aligned_fraction_query_percent": 84.39, "aligned_fraction_reference_percent": 93.75, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_029070185.2" }, { "aligned_fraction_query_percent": 84.39, "aligned_fraction_reference_percent": 88.91, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_030848025.1" }, { "aligned_fraction_query_percent": 83.30, "aligned_fraction_reference_percent": 92.27, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_031165635.1" }, { "aligned_fraction_query_percent": 84.62, "aligned_fraction_reference_percent": 91.91, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_038069265.2" }, { "aligned_fraction_query_percent": 85.32, "aligned_fraction_reference_percent": 91.13, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_041378915.1" }, { "aligned_fraction_query_percent": 85.31, "aligned_fraction_reference_percent": 91.12, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_041378925.1" }, { "aligned_fraction_query_percent": 85.03, "aligned_fraction_reference_percent": 91.84, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_041410215.1" }, { "aligned_fraction_query_percent": 85.34, "aligned_fraction_reference_percent": 90.51, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_043969345.1" }, { "aligned_fraction_query_percent": 84.19, "aligned_fraction_reference_percent": 91.21, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_050157255.1" }, { "aligned_fraction_query_percent": 85.02, "aligned_fraction_reference_percent": 93.33, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_050245065.1" }, { "aligned_fraction_query_percent": 85.14, "aligned_fraction_reference_percent": 92.20, "ani_percent": 98.92, "reference_id": "genomovar_chromosome:GCA_052073625.1" }, { "aligned_fraction_query_percent": 83.75, "aligned_fraction_reference_percent": 88.74, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_013635495.1" }, { "aligned_fraction_query_percent": 85.29, "aligned_fraction_reference_percent": 91.70, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_021398115.1" }, { "aligned_fraction_query_percent": 82.84, "aligned_fraction_reference_percent": 93.34, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_030411175.2" }, { "aligned_fraction_query_percent": 84.82, "aligned_fraction_reference_percent": 94.22, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_041005335.1" }, { "aligned_fraction_query_percent": 85.01, "aligned_fraction_reference_percent": 93.64, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_050871235.1" }, { "aligned_fraction_query_percent": 84.81, "aligned_fraction_reference_percent": 92.11, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_050871245.1" }, { "aligned_fraction_query_percent": 84.89, "aligned_fraction_reference_percent": 92.10, "ani_percent": 98.91, "reference_id": "genomovar_chromosome:GCA_052073395.1" }, { "aligned_fraction_query_percent": 82.51, "aligned_fraction_reference_percent": 88.88, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_008931525.1" }, { "aligned_fraction_query_percent": 85.30, "aligned_fraction_reference_percent": 91.70, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_021397695.1" }, { "aligned_fraction_query_percent": 83.09, "aligned_fraction_reference_percent": 91.76, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_023734835.1" }, { "aligned_fraction_query_percent": 84.84, "aligned_fraction_reference_percent": 92.31, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_023734975.1" }, { "aligned_fraction_query_percent": 84.87, "aligned_fraction_reference_percent": 93.73, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_038627045.2" }, { "aligned_fraction_query_percent": 84.45, "aligned_fraction_reference_percent": 92.98, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_041378885.1" }, { "aligned_fraction_query_percent": 82.96, "aligned_fraction_reference_percent": 90.70, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_043968025.1" }, { "aligned_fraction_query_percent": 83.30, "aligned_fraction_reference_percent": 92.19, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_050165125.1" }, { "aligned_fraction_query_percent": 83.43, "aligned_fraction_reference_percent": 92.34, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_050166045.1" }, { "aligned_fraction_query_percent": 84.62, "aligned_fraction_reference_percent": 91.66, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_050239815.1" }, { "aligned_fraction_query_percent": 84.28, "aligned_fraction_reference_percent": 93.92, "ani_percent": 98.90, "reference_id": "genomovar_chromosome:GCA_050245235.1" }, { "aligned_fraction_query_percent": 83.56, "aligned_fraction_reference_percent": 89.63, "ani_percent": 98.88, "reference_id": "genomovar_chromosome:GCA_040096145.1" }, { "aligned_fraction_query_percent": 84.57, "aligned_fraction_reference_percent": 90.98, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_002968455.1" }, { "aligned_fraction_query_percent": 83.45, "aligned_fraction_reference_percent": 90.47, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_013375955.1" }, { "aligned_fraction_query_percent": 81.33, "aligned_fraction_reference_percent": 89.16, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_019048625.1" }, { "aligned_fraction_query_percent": 84.21, "aligned_fraction_reference_percent": 89.48, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_036687415.1" }, { "aligned_fraction_query_percent": 84.95, "aligned_fraction_reference_percent": 90.59, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_048388455.1" }, { "aligned_fraction_query_percent": 84.91, "aligned_fraction_reference_percent": 92.08, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_049102985.2" }, { "aligned_fraction_query_percent": 83.36, "aligned_fraction_reference_percent": 92.26, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_050161365.1" }, { "aligned_fraction_query_percent": 83.89, "aligned_fraction_reference_percent": 90.83, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_050186865.1" }, { "aligned_fraction_query_percent": 83.44, "aligned_fraction_reference_percent": 91.72, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_052921675.1" }, { "aligned_fraction_query_percent": 84.84, "aligned_fraction_reference_percent": 92.57, "ani_percent": 98.86, "reference_id": "genomovar_chromosome:GCA_905231985.2" }, { "aligned_fraction_query_percent": 81.97, "aligned_fraction_reference_percent": 92.40, "ani_percent": 98.81, "reference_id": "genomovar_chromosome:GCA_044792965.1" }, { "aligned_fraction_query_percent": 84.77, "aligned_fraction_reference_percent": 91.89, "ani_percent": 98.81, "reference_id": "genomovar_chromosome:GCA_052412295.1" }, { "aligned_fraction_query_percent": 85.63, "aligned_fraction_reference_percent": 92.26, "ani_percent": 98.81, "reference_id": "genomovar_chromosome:GCA_905232845.2" }, { "aligned_fraction_query_percent": 85.53, "aligned_fraction_reference_percent": 90.09, "ani_percent": 98.80, "reference_id": "genomovar_chromosome:GCA_014117285.1" }, { "aligned_fraction_query_percent": 85.22, "aligned_fraction_reference_percent": 91.53, "ani_percent": 98.80, "reference_id": "genomovar_chromosome:GCA_024182025.1" }, { "aligned_fraction_query_percent": 82.60, "aligned_fraction_reference_percent": 90.19, "ani_percent": 98.75, "reference_id": "genomovar_chromosome:GCA_003051945.2" }, { "aligned_fraction_query_percent": 82.39, "aligned_fraction_reference_percent": 89.19, "ani_percent": 98.75, "reference_id": "genomovar_chromosome:GCA_013629675.1" }, { "aligned_fraction_query_percent": 85.09, "aligned_fraction_reference_percent": 91.61, "ani_percent": 98.73, "reference_id": "genomovar_chromosome:GCA_048572805.1" }, { "aligned_fraction_query_percent": 85.46, "aligned_fraction_reference_percent": 88.05, "ani_percent": 98.48, "reference_id": "genomovar_chromosome:GCA_013629455.1" } ], "not_returned_reference_ids": [], "parameters": "c125_m1000_learnedANI_s80_minAF0_uncapped", "query_scope": "whole_assembly_as_supplied", "query_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "reference_count": 173, "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "reference_scope": "historical_chromosome_record_set", "returned_count": 173, "status": "completed" }, "status": "assigned", "warnings": [ "Operational match to a frozen definition, not a population boundary or purity estimate." ] }, "genomovar_id": "ECTX-GV-2026-10-02-v1-GV10", "implementation": { "name": "pterobacter", "version": "0.0.0" }, "input": { "anim": { "binding": "supplied_records", "bound_pairs": [], "excluded": [], "method_profile": null, "other_query_records": 0, "source": "generated_native_pairs", "unattributed_records": 0 }, "bytes": 5280992, "engine_version": "0.3.2", "evidence_schema": "2.0.0-dev-evidence", "evidence_sha256": "fa30effe40ead1906508371b3e110d4a4a982991c675e2122d7703767103b9b7", "file": "GCA_013738375.1.fna", "kind": "assembly", "mask": { "assessed_panel_reference_count": 140, "excluded_reference_ids": [], "panel_reference_count": 140 }, "ordinal": 1, "primary_inventory_sha256": "254ae64f778017decf384eb946997722f73f9ae25e1001fc25cd1eb7f72b305b", "query_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "records": [ { "header": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "length": 4939254, "ordinal": 1, "sequence_sha256": "697ad265ae31a962fdac1250d83ab86bf389366219e16405f36cb8a09050cda4" }, { "header": "CP056720.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_2, complete sequence", "length": 123311, "ordinal": 2, "sequence_sha256": "cec4c37b890897578092ffd0cba117199be8e306056a3a224f99acdc825747f8" }, { "header": "CP056721.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_3, complete sequence", "length": 118204, "ordinal": 3, "sequence_sha256": "ab60e1ff7fe303fdabeefe6a9b5d9cc450777ddc3ab279a508ae3e4da3143a83" }, { "header": "CP056722.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_4, complete sequence", "length": 15144, "ordinal": 4, "sequence_sha256": "0e44b3e5dfa7a331f7a34d93de05fc1e2153194168e089548c3b8a3b02689ca1" }, { "header": "CP056723.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_5, complete sequence", "length": 6974, "ordinal": 5, "sequence_sha256": "328d57a48ffbed582ce3c8504fea0bd149ece226ada478dfbddab0bdcd73d73d" }, { "header": "CP056724.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_6, complete sequence", "length": 4859, "ordinal": 6, "sequence_sha256": "431260ea39e9618e6c92288c22dba5f5bf323d700eb430216a85bc1112d7beed" }, { "header": "CP056725.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_7, complete sequence", "length": 4783, "ordinal": 7, "sequence_sha256": "0ff664c6da035241586cc66e2fb18b6f03025f0dacd0e95d6c7af9dff25d08bf" }, { "header": "CP056726.1 Enterobacter hormaechei strain RHBSTW-00333 plasmid pRHBSTW-00333_8, complete sequence", "length": 2494, "ordinal": 8, "sequence_sha256": "6c89fad30cebe06bc0f4d53f3983605e4429f86966bdc24a52317b4d1d6d9cfb" } ], "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "sample_name": "RHBSTW-00333", "sequence_scope": "whole_assembly_as_supplied", "source": { "entry": "GCA_013738375.1.fna", "file": "samples.tsv", "kind": "sample_sheet", "line": 2 }, "total_bases": 5215023, "verification": "query_bytes_hashed; reference_package_verified" }, "legacy_v1_result": { "assignment_reason": "conditional_assembly_assignment", "policy_id": "conservative-assembly-v1", "reasons": [], "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "status": "assigned", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii", "subspecies_reason": "diagnostic_candidate_only" }, "max_skani_ani_percent": 100.0, "measurement": { "engine_profile": "skani-0.3.2-avx2-content-order-dna-v2", "engine_revision": "22da4ae9e44b2e3e686c8e5c71fcd16cec2b9791", "engine_version": "0.3.2", "not_returned_reference_files": [], "reporting_floor_percent": 15, "rows": [ { "af_query": 99.99, "af_reference": 99.99, "ani": 100.00, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013738375.1.fna" }, { "af_query": 82.69, "af_reference": 92.17, "ani": 98.97, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017186.1 Enterobacter hormaechei subsp. hoffmannii strain DSM 14563 chromosome, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729745.1.fna" }, { "af_query": 85.66, "af_reference": 90.75, "ani": 98.97, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP058157.1 Enterobacter hormaechei strain RHBSTW-00086 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013625435.1.fna" }, { "af_query": 85.51, "af_reference": 91.21, "ani": 98.97, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM128657.1 Enterobacter sp. CCM 8629 strain CCM_8629 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052922205.1.fna" }, { "af_query": 83.07, "af_reference": 90.16, "ani": 98.92, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP096923.1 Enterobacter hormaechei strain NY0401 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_027595125.1.fna" }, { "af_query": 83.56, "af_reference": 89.63, "ani": 98.88, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "JBBMFH010000001.1 Enterobacter intestinihominis strain CLA-AC-H004 CLA-AC-H004_contig_1_length_435703, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040096145.1.fna" }, { "af_query": 84.38, "af_reference": 86.96, "ani": 98.61, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM128643.1 Enterobacter sp. CCM 8630 strain CCM_8630 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052921675.1.fna" }, { "af_query": 85.41, "af_reference": 86.58, "ani": 98.60, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP034754.1 Enterobacter hormaechei subsp. hoffmannii strain Eh1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009834325.1.fna" }, { "af_query": 81.75, "af_reference": 87.21, "ani": 96.08, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056155.1 Enterobacter hormaechei strain RHBSTW-00844 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013731155.1.fna" }, { "af_query": 80.09, "af_reference": 86.85, "ani": 95.89, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056747.1 Enterobacter hormaechei strain RHBSTW-00217 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013743755.1.fna" }, { "af_query": 78.60, "af_reference": 84.53, "ani": 95.77, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056132.1 Enterobacter hormaechei strain RHBSTW-00916 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013726395.1.fna" }, { "af_query": 75.89, "af_reference": 80.84, "ani": 95.77, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP135594.1 Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_032389435.1.fna" }, { "af_query": 78.83, "af_reference": 87.02, "ani": 95.75, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017180.1 Enterobacter hormaechei subsp. oharae strain DSM 16687, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729705.1.fna" }, { "af_query": 79.95, "af_reference": 85.91, "ani": 95.75, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056742.1 Enterobacter hormaechei strain RHBSTW-00220 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013743295.1.fna" }, { "af_query": 80.45, "af_reference": 83.23, "ani": 95.74, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP021902.1 Enterobacter cloacae complex sp. strain AR_0136 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002204775.1.fna" }, { "af_query": 77.80, "af_reference": 83.39, "ani": 95.74, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP104471.1 Enterobacter hormaechei strain 80014967 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025369895.1.fna" }, { "af_query": 79.60, "af_reference": 84.97, "ani": 95.74, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP126878.1 Enterobacter hormaechei strain Ehh_21 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030848005.1.fna" }, { "af_query": 78.22, "af_reference": 87.50, "ani": 95.72, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017183.1 Enterobacter hormaechei subsp. xiangfangensis strain LMG27195 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729785.1.fna" }, { "af_query": 78.02, "af_reference": 84.78, "ani": 95.64, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP175755.1 Enterobacter hormaechei subsp. xiangfangensis strain NY14244 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_051092005.1.fna" }, { "af_query": 79.87, "af_reference": 83.21, "ani": 95.64, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM132286.1 Enterobacter hormaechei strain 16AR1296 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053699795.1.fna" }, { "af_query": 79.88, "af_reference": 83.61, "ani": 95.52, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP175751.1 Enterobacter hormaechei subsp. xiangfangensis strain NY14234 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_051091715.1.fna" }, { "af_query": 80.08, "af_reference": 82.60, "ani": 95.51, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM130044.1 Enterobacter hormaechei strain EB00148 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030411255.2.fna" }, { "af_query": 77.98, "af_reference": 85.04, "ani": 95.49, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017179.1 Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729725.1.fna" }, { "af_query": 77.28, "af_reference": 82.75, "ani": 95.48, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM142177.1 Enterobacter hormaechei strain BZHJ2 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_054871305.1.fna" }, { "af_query": 81.37, "af_reference": 81.15, "ani": 95.40, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143654.1 Enterobacter hormaechei subsp. xiangfangensis strain ECC-257 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043965205.1.fna" }, { "af_query": 79.31, "af_reference": 77.13, "ani": 95.40, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP175625.1 Enterobacter hormaechei strain NY1461 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_046097115.1.fna" }, { "af_query": 78.82, "af_reference": 79.26, "ani": 95.39, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP174601.1 Enterobacter hormaechei strain NY2861 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_050871265.1.fna" }, { "af_query": 78.47, "af_reference": 83.41, "ani": 95.35, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP126807.1 Enterobacter hormaechei strain 22KM1314 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030848125.1.fna" }, { "af_query": 78.80, "af_reference": 79.90, "ani": 95.33, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP136935.1 Enterobacter sp. JJBC chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_036936505.1.fna" }, { "af_query": 76.35, "af_reference": 81.08, "ani": 94.98, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP166433.1 Enterobacter hormaechei strain 2024CK-00699 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_039734725.2.fna" }, { "af_query": 75.90, "af_reference": 80.52, "ani": 94.32, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP077308.1 Enterobacter hormaechei strain FDAARGOS 1433 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019048245.1.fna" }, { "af_query": 75.74, "af_reference": 78.51, "ani": 94.32, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP173521.1 Enterobacter hormaechei strain 98213 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045037665.1.fna" }, { "af_query": 75.92, "af_reference": 83.49, "ani": 94.20, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143756.1 Enterobacter hormaechei strain ECC-026 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043973395.1.fna" }, { "af_query": 74.92, "af_reference": 85.93, "ani": 94.19, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP134705.1 Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031852185.1.fna" }, { "af_query": 73.98, "af_reference": 79.28, "ani": 94.09, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM130032.1 Enterobacter hormaechei strain EB00226 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053349035.1.fna" }, { "af_query": 73.61, "af_reference": 84.30, "ani": 93.76, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "SJON01000001.1 Enterobacter quasihormaechei strain WCHEQ120003 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004331385.1.fna" }, { "af_query": 69.25, "af_reference": 71.35, "ani": 91.50, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056779.1 Enterobacter pasteurii strain D41-sc-1712200 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013376835.1.fna" }, { "af_query": 68.46, "af_reference": 74.14, "ani": 91.45, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "JARCHI010000010.1 Enterobacter pasteurii strain A-8 NODE_10_covk_22.303966_covr_63.946_cutoff_34, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_028890245.1.fna" }, { "af_query": 55.37, "af_reference": 60.75, "ani": 89.67, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP110983.1 Enterobacter bugandensis strain E104107 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031218175.1.fna" }, { "af_query": 55.25, "af_reference": 60.65, "ani": 89.54, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP039452.1 Enterobacter bugandensis strain 1367 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004804395.1.fna" }, { "af_query": 55.69, "af_reference": 59.83, "ani": 89.51, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP163533.1 Enterobacter bugandensis strain YF-3 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053165385.1.fna" }, { "af_query": 55.70, "af_reference": 60.62, "ani": 89.48, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP162195.1 Enterobacter chuandaensis strain STK53-E chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045348695.1.fna" }, { "af_query": 55.97, "af_reference": 61.35, "ani": 89.46, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143687.1 Enterobacter bugandensis strain ECC-190 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043967505.1.fna" }, { "af_query": 55.62, "af_reference": 57.58, "ani": 89.43, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP077206.1 Enterobacter bugandensis strain FDAARGOS 1427 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019046905.1.fna" }, { "af_query": 53.36, "af_reference": 56.57, "ani": 89.41, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP097173.1 Enterobacter chuandaensis strain E20191216 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_039718975.1.fna" }, { "af_query": 54.22, "af_reference": 54.67, "ani": 89.37, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP135253.1 Enterobacter chuandaensis strain FAHZZU5885 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045278925.1.fna" }, { "af_query": 55.64, "af_reference": 59.69, "ani": 89.35, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM136145.1 Enterobacter bugandensis strain 20TX0143 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_054382355.1.fna" }, { "af_query": 54.78, "af_reference": 60.84, "ani": 89.33, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143725.1 Enterobacter bugandensis strain ECC-105 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043970685.1.fna" }, { "af_query": 52.52, "af_reference": 55.44, "ani": 89.29, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM130037.1 Enterobacter roggenkampii strain EB00178 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030410235.2.fna" }, { "af_query": 55.29, "af_reference": 59.83, "ani": 89.26, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143681.1 Enterobacter bugandensis strain ECC-209 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043966825.1.fna" }, { "af_query": 54.31, "af_reference": 60.15, "ani": 89.17, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "JAPKNE010000001.1 Enterobacter nematophilus strain E-TC7 Strain6_1a_1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_026344075.1.fna" }, { "af_query": 57.10, "af_reference": 60.96, "ani": 89.14, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "OZ345835.1 Enterobacter mori strain R-92920 genome assembly, chromosome: 1", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_977007405.1.fna" }, { "af_query": 56.48, "af_reference": 60.81, "ani": 89.05, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP091779.1 Enterobacter mori strain ACYC.E9L chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_022014715.1.fna" }, { "af_query": 51.19, "af_reference": 55.55, "ani": 89.01, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP011863.1 Enterobacter asburiae strain ATCC 35953, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001521715.1.fna" }, { "af_query": 54.29, "af_reference": 57.32, "ani": 89.01, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP060733.1 Enterobacter roggenkampii strain Ed-982 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_014490825.1.fna" }, { "af_query": 54.24, "af_reference": 60.08, "ani": 89.00, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "RXRX01000001.1 Enterobacter quasimori strain 090044 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003964905.1.fna" }, { "af_query": 50.57, "af_reference": 57.00, "ani": 88.98, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP056716.1 Enterobacter asburiae strain RHBSTW-00516 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013784425.1.fna" }, { "af_query": 52.83, "af_reference": 59.47, "ani": 88.97, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "QZCS01000001.1 Enterobacter chuandaensis strain 090028 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003594915.1.fna" }, { "af_query": 53.30, "af_reference": 55.74, "ani": 88.96, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP060737.1 Enterobacter roggenkampii isolate enterobacter cloacae chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_014490845.1.fna" }, { "af_query": 53.34, "af_reference": 55.19, "ani": 88.96, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP128629.1 Enterobacter roggenkampii strain WL110 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_047116295.1.fna" }, { "af_query": 55.76, "af_reference": 56.70, "ani": 88.95, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM136141.1 Enterobacter mori strain 20WA0184 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_054382275.1.fna" }, { "af_query": 55.76, "af_reference": 60.75, "ani": 88.94, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP104285.1 Enterobacter mori strain JT.W3M11 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025244905.1.fna" }, { "af_query": 52.97, "af_reference": 52.17, "ani": 88.91, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP199517.1 Enterobacter asburiae strain x220589 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052569525.1.fna" }, { "af_query": 50.82, "af_reference": 53.49, "ani": 88.86, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP045064.2 Enterobacter roggenkampii strain WCHER090065 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009184765.2.fna" }, { "af_query": 55.14, "af_reference": 60.32, "ani": 88.85, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP195848.1 Enterobacter mori strain RYYT.gf44 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_051517475.1.fna" }, { "af_query": 52.25, "af_reference": 55.61, "ani": 88.84, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017184.1 Enterobacter roggenkampii strain DSM 16690, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729805.1.fna" }, { "af_query": 54.07, "af_reference": 59.19, "ani": 88.81, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP134642.1 Enterobacter asburiae strain 30A:C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031851495.1.fna" }, { "af_query": 55.34, "af_reference": 58.50, "ani": 88.78, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143766.1 Enterobacter mori strain ECC-007 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043973405.1.fna" }, { "af_query": 50.03, "af_reference": 57.28, "ani": 88.77, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP126604.1 Enterobacter dykesii strain E1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_008364625.2.fna" }, { "af_query": 52.21, "af_reference": 56.61, "ani": 88.74, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP086201.1 Enterobacter roggenkampii strain F1057 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_021347605.1.fna" }, { "af_query": 52.86, "af_reference": 56.44, "ani": 88.72, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP169395.1 Enterobacter sp. fkY84-4 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052974775.1.fna" }, { "af_query": 51.19, "af_reference": 52.78, "ani": 88.70, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "AP038752.1 Enterobacter pseudoroggenkampii GVv1 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045866555.1.fna" }, { "af_query": 49.81, "af_reference": 55.42, "ani": 88.63, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP034769.1 Enterobacter sp. N18-03635 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004006055.1.fna" }, { "af_query": 51.68, "af_reference": 49.26, "ani": 88.63, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP074170.1 Enterobacter sp. JBIWA003 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019968825.1.fna" }, { "af_query": 50.14, "af_reference": 58.41, "ani": 88.62, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "AP019007.1 Enterobacter oligotrophicus CCA6 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009176645.1.fna" }, { "af_query": 49.88, "af_reference": 54.99, "ani": 88.60, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP129026.1 Enterobacter pseudoroggenkampii strain FY158 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030406165.1.fna" }, { "af_query": 52.69, "af_reference": 53.75, "ani": 88.59, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "AP026886.1 Enterobacter asburiae KAM576 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025999975.1.fna" }, { "af_query": 52.03, "af_reference": 54.53, "ani": 88.59, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM132278.1 Enterobacter kobei strain 19AR1162 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053699365.1.fna" }, { "af_query": 50.28, "af_reference": 58.68, "ani": 88.58, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP162152.1 Enterobacter vonholyi strain STK80-C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040834095.1.fna" }, { "af_query": 49.82, "af_reference": 52.73, "ani": 88.56, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017181.1 Enterobacter kobei strain DSM 13645 chromosome, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729765.1.fna" }, { "af_query": 51.82, "af_reference": 54.79, "ani": 88.56, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP193790.1 Enterobacter wuhouensis strain TMH.P3 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_050847275.1.fna" }, { "af_query": 51.77, "af_reference": 50.31, "ani": 88.55, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP042578.1 Enterobacter kobei strain C16 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_008931545.1.fna" }, { "af_query": 50.27, "af_reference": 50.24, "ani": 88.54, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP043318.1 Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001984825.2.fna" }, { "af_query": 51.02, "af_reference": 56.29, "ani": 88.54, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143745.1 Enterobacter quasiroggenkampii strain ECC-072 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043972695.1.fna" }, { "af_query": 49.50, "af_reference": 54.75, "ani": 88.54, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP133814.1 Enterobacter kobei strain EK1918 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045278755.1.fna" }, { "af_query": 51.80, "af_reference": 56.11, "ani": 88.53, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP129025.1 Enterobacter pseudoroggenkampii strain SC1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030406125.1.fna" }, { "af_query": 52.44, "af_reference": 56.72, "ani": 88.53, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP142124.1 Enterobacter wuhouensis strain AV1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_035835995.1.fna" }, { "af_query": 51.06, "af_reference": 56.50, "ani": 88.52, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP110533.1 Enterobacter quasiroggenkampii strain WS12-3 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_029542725.1.fna" }, { "af_query": 50.90, "af_reference": 57.83, "ani": 88.51, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP037919.1 Enterobacter cloacae complex sp. strain N13-01531 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004355165.1.fna" }, { "af_query": 51.32, "af_reference": 56.88, "ani": 88.51, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP157375.1 Enterobacter cloacae complex sp. Mu1197 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040059225.1.fna" }, { "af_query": 51.36, "af_reference": 52.64, "ani": 88.51, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143738.1 Enterobacter chengduensis strain ECC-093 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043971375.1.fna" }, { "af_query": 50.14, "af_reference": 54.40, "ani": 88.50, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "LFDQ02000010.1 Enterobacter quasiroggenkampii strain WCHECL1060 NODE_10_length_82615_cov_44.405, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001039365.2.fna" }, { "af_query": 50.97, "af_reference": 55.24, "ani": 88.49, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "AP019634.1 Enterobacter sp. 18A13 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_007035975.1.fna" }, { "af_query": 53.51, "af_reference": 55.39, "ani": 88.48, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP043342.1 Enterobacter huaxiensis strain 090008 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003594935.2.fna" }, { "af_query": 52.63, "af_reference": 56.26, "ani": 88.48, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP149853.1 Enterobacter asburiae strain 2024CK-00035 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_035556915.2.fna" }, { "af_query": 51.20, "af_reference": 51.68, "ani": 88.47, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP032897.1 Enterobacter kobei strain WCHEK045523 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003665375.1.fna" }, { "af_query": 49.62, "af_reference": 51.55, "ani": 88.47, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP074159.1 Enterobacter sp. JBIWA005 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019968805.1.fna" }, { "af_query": 52.83, "af_reference": 55.55, "ani": 88.46, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "GL890773.1 Enterobacter mori LMG 25706 genomic scaffold ENTMO1_scaffold1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_000211415.1.fna" }, { "af_query": 49.80, "af_reference": 52.53, "ani": 88.46, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM132264.1 Enterobacter kobei strain 22AR0121 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053698735.1.fna" }, { "af_query": 51.49, "af_reference": 54.75, "ani": 88.45, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP174016.1 Enterobacter asburiae strain 2023CK-01510 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_034331165.2.fna" }, { "af_query": 51.01, "af_reference": 54.36, "ani": 88.43, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "SJOO01000001.1 Enterobacter wuhouensis strain WCHEW120002 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004331265.1.fna" }, { "af_query": 50.84, "af_reference": 49.09, "ani": 88.43, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "AP022498.1 Enterobacter kobei STN0717-53 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_015137465.1.fna" }, { "af_query": 50.41, "af_reference": 48.57, "ani": 88.41, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "AP022446.1 Enterobacter kobei STW0522-60 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_015135855.1.fna" }, { "af_query": 50.54, "af_reference": 53.29, "ani": 88.41, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "JARDVK010000001.1 Enterobacter rongchengensis strain 170250 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_034008275.1.fna" }, { "af_query": 51.28, "af_reference": 55.41, "ani": 88.39, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP025034.2 Enterobacter sp. SGAir0187 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002952735.2.fna" }, { "af_query": 51.03, "af_reference": 54.70, "ani": 88.38, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "JAPMLV010000001.1 Enterobacter pseudoroggenkampii strain 155092 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_026420145.1.fna" }, { "af_query": 49.73, "af_reference": 56.24, "ani": 88.37, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP117838.1 Enterobacter sp. S-33 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_028735835.1.fna" }, { "af_query": 47.26, "af_reference": 50.41, "ani": 88.34, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "POVL01000001.1 Enterobacter sichuanensis strain WCHECL1597 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002939185.1.fna" }, { "af_query": 52.53, "af_reference": 48.93, "ani": 88.33, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP001918.1 Enterobacter cloacae subsp. cloacae ATCC 13047, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_000025565.1.fna" }, { "af_query": 49.60, "af_reference": 56.35, "ani": 88.27, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "VTUC01000008.1 Enterobacter vonholyi strain E13 NODE_10_length_141926_cov_60.4185, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_008364555.1.fna" }, { "af_query": 48.59, "af_reference": 50.58, "ani": 88.26, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143650.1 Enterobacter sichuanensis strain ECC-263 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043964395.1.fna" }, { "af_query": 51.29, "af_reference": 48.38, "ani": 88.23, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM132256.1 Enterobacter cloacae strain 20AR0121 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053691555.1.fna" }, { "af_query": 48.02, "af_reference": 50.74, "ani": 88.14, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP170190.1 Enterobacter sichuanensis strain B36 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_042434935.1.fna" }, { "af_query": 47.35, "af_reference": 52.41, "ani": 88.12, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP027986.1 Enterobacter sichuanensis strain SGAir0282 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009036245.1.fna" }, { "af_query": 49.60, "af_reference": 52.59, "ani": 88.02, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP085080.1 Enterobacter cloacae strain ECl_1.VN chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_020540925.1.fna" }, { "af_query": 50.26, "af_reference": 53.44, "ani": 88.01, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CM130310.1 Enterobacter cloacae strain 2024HL-01377 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_046015535.2.fna" }, { "af_query": 50.14, "af_reference": 49.78, "ani": 88.00, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP143746.1 Enterobacter cloacae subsp. dissolvens strain ECC-068 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043972705.1.fna" }, { "af_query": 49.10, "af_reference": 52.85, "ani": 87.99, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "JARDVI010000001.1 Enterobacter chinensis strain 170198 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_034008295.1.fna" }, { "af_query": 49.47, "af_reference": 52.10, "ani": 87.97, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP102246.1 Enterobacter cloacae complex sp. R_G8 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_024599795.1.fna" }, { "af_query": 49.51, "af_reference": 51.97, "ani": 87.95, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP003678.1 Enterobacter cloacae subsp. dissolvens SDM, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_000235765.3.fna" }, { "af_query": 49.24, "af_reference": 53.07, "ani": 87.91, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "WJWQ01000001.1 Enterobacter cloacae subsp. dissolvens strain ATCC 23373 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009660455.1.fna" }, { "af_query": 49.01, "af_reference": 53.24, "ani": 87.90, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP162156.1 Enterobacter cloacae strain STK49-C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040892575.1.fna" }, { "af_query": 49.58, "af_reference": 53.26, "ani": 87.89, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP134674.1 Enterobacter cloacae strain 99183042147 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031851625.1.fna" }, { "af_query": 50.18, "af_reference": 52.28, "ani": 87.87, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP045487.1 Enterobacter cloacae strain 14240244101 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_016864115.1.fna" }, { "af_query": 50.35, "af_reference": 51.61, "ani": 87.85, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017475.1 Enterobacter cloacae strain M12X01451 chromosome complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002303275.1.fna" }, { "af_query": 51.45, "af_reference": 53.41, "ani": 87.84, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "OW968328.1 Enterobacter cloacae isolate 1382 genome assembly, chromosome: main", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_905331265.2.fna" }, { "af_query": 43.41, "af_reference": 46.82, "ani": 87.77, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP083824.1 Enterobacter ludwigii strain 11894-yvys chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_023023105.1.fna" }, { "af_query": 47.09, "af_reference": 50.52, "ani": 87.67, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP174015.1 Enterobacter ludwigii strain 2024CK-01663 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043647335.2.fna" }, { "af_query": 46.35, "af_reference": 48.83, "ani": 87.58, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP133410.1 Enterobacter ludwigii strain AG32E chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_035323105.1.fna" }, { "af_query": 45.84, "af_reference": 49.58, "ani": 87.55, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP077290.1 Enterobacter cancerogenus strain FDAARGOS 1428 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019047785.1.fna" }, { "af_query": 46.99, "af_reference": 49.17, "ani": 87.54, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP192448.1 Enterobacter ludwigii strain 4b24 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_050626905.1.fna" }, { "af_query": 46.59, "af_reference": 49.06, "ani": 87.52, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP017279.1 Enterobacter ludwigii strain EN-119 chromosome, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001750725.1.fna" }, { "af_query": 44.30, "af_reference": 48.16, "ani": 87.47, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP025225.1 Enterobacter cancerogenus strain CR-Eb1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002850575.1.fna" }, { "af_query": 46.34, "af_reference": 48.36, "ani": 87.47, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP134649.1 Enterobacter ludwigii strain 51A:C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031851515.1.fna" }, { "af_query": 45.96, "af_reference": 51.13, "ani": 87.41, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP099310.1 Enterobacter ludwigii strain RHB28-E3-C01 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_029718255.1.fna" }, { "af_query": 45.84, "af_reference": 49.29, "ani": 87.34, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP028950.1 Enterobacter cloacae complex sp. FDA-CDC-AR_0164 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003071645.1.fna" }, { "af_query": 46.83, "af_reference": 49.78, "ani": 87.34, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP099325.1 Enterobacter ludwigii strain RHB47-SO-C01 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_029721015.1.fna" }, { "af_query": 44.35, "af_reference": 46.87, "ani": 87.27, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "LR881936.1 Enterobacter cancerogenus strain UPC1 genome assembly, chromosome: UPC1", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_904425455.1.fna" }, { "af_query": 40.54, "af_reference": 43.22, "ani": 86.90, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "CP104014.1 Enterobacter sp. CP102 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025152625.1.fna" }, { "af_query": 40.65, "af_reference": 42.75, "ani": 86.27, "query_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_contig": "LXES01000001.1 Enterobacter soli ATCC BAA-2102 Sequence00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001654845.1.fna" } ], "screen_percent": 80, "settings": "primary", "sketched_bases": 5215023, "total_input_bases": 5215023 }, "method_diagnostics": [], "mlst": { "alleles": { "dnaA": "59", "fusA": "64", "gyrB": "81", "leuS": "9", "pyrG": "79", "rplB": "37", "rpoB": "38" }, "candidate_is_reported_ST": false, "comparator_style": { "SCORE": 100, "ST": "286", "STATUS": "PERFECT" }, "copy_diagnostic_reasons": [], "database": { "allele_count": 4751, "complete_through_cutoff_independently_established": false, "cutoff_evidence": "Primary server explicitly restricts anonymous scheme and all seven locus exports to records submitted on or prior to 2024-12-31", "data_sha256": { "pubmlst/ecloacae/dnaA.tfa": "cb78a1c22e209d58e4399909fa7a7cc26f3def2c7c83ee5a4c2441f2a7a92b2a", "pubmlst/ecloacae/ecloacae.txt": "ea08c616718901d21ae96b6c5af78747b9f160697112a886fc9e68d7333046af", "pubmlst/ecloacae/fusA.tfa": "c93c4f044bc615f6b8b3506a103852ef7d2a1bf9336bcc2b27a785091b5227a8", "pubmlst/ecloacae/gyrB.tfa": "20b0985b1ab7d10a94ec51bc081616d3789f4dec4293642c01b7927c01677ff8", "pubmlst/ecloacae/leuS.tfa": "5d29f152cc9050dad4a50a74bbac5ba5477be7620632d32b2773fec728ff9b50", "pubmlst/ecloacae/pyrG.tfa": "aa29aae067f04bef8e552cae870d8794224c09f3fdd73bdc395f9deb77678207", "pubmlst/ecloacae/rplB.tfa": "b6b37cd3b396fa3e449ca60e0347bed82eb92318b5cc1461b4b05284173aed3f", "pubmlst/ecloacae/rpoB.tfa": "8ba6f160a52019e6a337e0648d2cf731f570947002950e4008f5072f2cfec015" }, "data_terms_url": "https://pubmlst.org/terms-conditions", "limitation": "Bundled MLST database: limited to PubMLST records submitted on or before 31 December 2024. Alleles, ST profiles and schemes submitted from 1 January 2025 onward are not included. Unmatched profiles may therefore correspond to STs described after this cutoff.", "loci": [ "dnaA", "fusA", "gyrB", "leuS", "pyrG", "rplB", "rpoB" ], "package_id": "enterobacter-pubmlst-pre2025-retrieved-20261006", "package_manifest_sha256": "0f0a4bd051e7a29d97f530a38982026df10ca223805e7b0147b19796763978dd", "post_cutoff_currency": "not_claimed", "profile_count": 3291, "retrieved_utc": "2026-10-05T22:48:14.036646+00:00", "scheme": "ecloacae", "scheme_description": "Enterobacter spp. seven-locus MLST", "sequence_state": "2026 retrieval of anonymously accessible pre-2025-submission records; not a 2024 byte snapshot", "source_urls": { "pubmlst/ecloacae/dnaA.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/dnaA/alleles_fasta", "pubmlst/ecloacae/ecloacae.txt": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/schemes/1/profiles_csv", "pubmlst/ecloacae/fusA.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/fusA/alleles_fasta", "pubmlst/ecloacae/gyrB.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/gyrB/alleles_fasta", "pubmlst/ecloacae/leuS.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/leuS/alleles_fasta", "pubmlst/ecloacae/pyrG.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/pyrG/alleles_fasta", "pubmlst/ecloacae/rplB.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/rplB/alleles_fasta", "pubmlst/ecloacae/rpoB.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/rpoB/alleles_fasta" }, "submission_cutoff": "2024-12-31" }, "discordant_exact_allele_loci": [], "engine": { "comparator": { "name": "mlst 2.32.2 with BLAST+ 2.16.0", "relation": "rules reproduced on development fixtures; comparator not executed" }, "implementation": { "name": "pterobacter", "version": "0.0.0" }, "method": "exact 32-mer seeds with ungapped X-drop extension", "name": "terobacter-ungapped-mlst", "profile": { "ambiguous_bases": "mismatch", "evalue": "1e-20", "min_coverage_percent": 50, "min_identity_percent": 95, "penalty": -2, "reward": 1, "word_size": 32, "xdrop_raw": 13 }, "version": "1" }, "input_kind": "assembly", "location_verification": "exact_locations_checked_against_the_hashed_query_sequence", "loci": [ { "locus": "dnaA", "raw_token": "59", "reported_allele_ids": [ "59" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "59", "end_1based_inclusive": 1122, "record_id": "CP056719.1", "start_1based": 681, "strand": "plus" } ], "state": "single_exact_allele" }, { "locus": "fusA", "raw_token": "64", "reported_allele_ids": [ "64" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "64", "end_1based_inclusive": 4503317, "record_id": "CP056719.1", "start_1based": 4502672, "strand": "minus" } ], "state": "single_exact_allele" }, { "locus": "gyrB", "raw_token": "81", "reported_allele_ids": [ "81" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "81", "end_1based_inclusive": 4790, "record_id": "CP056719.1", "start_1based": 4357, "strand": "plus" } ], "state": "single_exact_allele" }, { "locus": "leuS", "raw_token": "9", "reported_allele_ids": [ "9" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "9", "end_1based_inclusive": 1352788, "record_id": "CP056719.1", "start_1based": 1352211, "strand": "minus" } ], "state": "single_exact_allele" }, { "locus": "pyrG", "raw_token": "79", "reported_allele_ids": [ "79" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "79", "end_1based_inclusive": 1955632, "record_id": "CP056719.1", "start_1based": 1955374, "strand": "plus" } ], "state": "single_exact_allele" }, { "locus": "rplB", "raw_token": "37", "reported_allele_ids": [ "37" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "37", "end_1based_inclusive": 4496628, "record_id": "CP056719.1", "start_1based": 4496022, "strand": "minus" } ], "state": "single_exact_allele" }, { "locus": "rpoB", "raw_token": "38", "reported_allele_ids": [ "38" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "38", "end_1based_inclusive": 240722, "record_id": "CP056719.1", "start_1based": 240178, "strand": "plus" } ], "state": "single_exact_allele" } ], "multiple_ids_same_sequence_loci": [], "profile_compatible_candidate_ST": null, "query_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "repeated_same_allele_loci": [], "requested": true, "schema": "terobacter.mlst/1", "scheme": "ecloacae", "scheme_routing": "explicitly_selected; applicability_not_established_by_ST", "sequence_scope": "whole_assembly_as_supplied", "sequence_type": "286", "state": "exact_profile_match", "status": "complete", "taxonomic_assignment_performed": false, "typing_role": "supplementary; does not establish genus, species, subspecies, lineage or genomovar", "unconfirmed_repeated_hit_loci": [] }, "nearest_parent": null, "panel_summary": [ { "anim_unmeasured_reference_count": 30, "best_skani_ani_percent": 100.0, "best_skani_reference_ids": [ "primary_whole:GCA_013738375.1" ], "challenging_reference_ids": [], "in_top_references": true, "panel_reference_count": 30, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "returned_reference_count": 30 }, { "anim_unmeasured_reference_count": 5, "best_skani_ani_percent": 94.32, "best_skani_reference_ids": [ "primary_whole:GCA_019048245.1", "primary_whole:GCA_045037665.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 5, "parent": { "concept_id": "ECTX-SP009", "kind": "species" }, "returned_reference_count": 5 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 93.76, "best_skani_reference_ids": [ "primary_whole:GCA_004331385.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP018", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 2, "best_skani_ani_percent": 91.5, "best_skani_reference_ids": [ "primary_whole:GCA_013376835.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 2, "parent": { "concept_id": "ECTX-SP016", "kind": "species" }, "returned_reference_count": 2 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 89.67, "best_skani_reference_ids": [ "primary_whole:GCA_031218175.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP003", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 4, "best_skani_ani_percent": 89.48, "best_skani_reference_ids": [ "primary_whole:GCA_045348695.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 4, "parent": { "concept_id": "ECTX-SP007", "kind": "species" }, "returned_reference_count": 4 }, { "anim_unmeasured_reference_count": 14, "best_skani_ani_percent": 89.29, "best_skani_reference_ids": [ "primary_whole:GCA_030410235.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 14, "parent": { "concept_id": "ECTX-SP019", "kind": "species" }, "returned_reference_count": 14 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 89.17, "best_skani_reference_ids": [ "primary_whole:GCA_026344075.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP014", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 89.14, "best_skani_reference_ids": [ "primary_whole:GCA_977007405.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP013", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 89.01, "best_skani_reference_ids": [ "primary_whole:GCA_001521715.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP002", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 4, "best_skani_ani_percent": 88.7, "best_skani_reference_ids": [ "primary_whole:GCA_045866555.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 4, "parent": { "concept_id": "ECTX-SP017", "kind": "species" }, "returned_reference_count": 4 }, { "anim_unmeasured_reference_count": 7, "best_skani_ani_percent": 88.63, "best_skani_reference_ids": [ "primary_whole:GCA_004006055.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 7, "parent": { "concept_id": "ECTX-SP023", "kind": "species" }, "returned_reference_count": 7 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 88.62, "best_skani_reference_ids": [ "primary_whole:GCA_009176645.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP015", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 88.59, "best_skani_reference_ids": [ "primary_whole:GCA_053699365.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP011", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 3, "best_skani_ani_percent": 88.56, "best_skani_reference_ids": [ "primary_whole:GCA_050847275.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 3, "parent": { "concept_id": "ECTX-SP024", "kind": "species" }, "returned_reference_count": 3 }, { "anim_unmeasured_reference_count": 3, "best_skani_ani_percent": 88.54, "best_skani_reference_ids": [ "primary_whole:GCA_001984825.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 3, "parent": { "concept_id": "ECTX-SP005", "kind": "species" }, "returned_reference_count": 3 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 88.48, "best_skani_reference_ids": [ "primary_whole:GCA_003594935.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP010", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 4, "best_skani_ani_percent": 88.34, "best_skani_reference_ids": [ "primary_whole:GCA_002939185.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 4, "parent": { "concept_id": "ECTX-SP021", "kind": "species" }, "returned_reference_count": 4 }, { "anim_unmeasured_reference_count": 13, "best_skani_ani_percent": 88.33, "best_skani_reference_ids": [ "primary_whole:GCA_000025565.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 13, "parent": { "concept_id": "ECTX-SP008", "kind": "species" }, "returned_reference_count": 13 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 87.99, "best_skani_reference_ids": [ "primary_whole:GCA_034008295.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP006", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 87.77, "best_skani_reference_ids": [ "primary_whole:GCA_023023105.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP001", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 87.67, "best_skani_reference_ids": [ "primary_whole:GCA_043647335.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP012", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 3, "best_skani_ani_percent": 87.55, "best_skani_reference_ids": [ "primary_whole:GCA_019047785.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 3, "parent": { "concept_id": "ECTX-SP004", "kind": "species" }, "returned_reference_count": 3 }, { "anim_unmeasured_reference_count": 2, "best_skani_ani_percent": 86.9, "best_skani_reference_ids": [ "primary_whole:GCA_025152625.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 2, "parent": { "concept_id": "ECTX-SP022", "kind": "species" }, "returned_reference_count": 2 } ], "policy_id": "conservative-assembly-anim-v2", "policy_mode": "default_candidate", "purity_established": false, "reasons": [], "reference_package": { "cohort_coverage_summary": { "named_Enterobacter_reference_evidence_present": 1046, "named_other_genus_context_reference_absent": 1, "restricted_or_out_of_genus_context_reference_absent": 14, "reviewed_unassigned_lineage_reference_absent": 9 }, "components": { "genomovar_chromosome": { "builds": [ { "bytes": 1761, "path": "metadata/build/genomovar_chromosome/000.artifact", "roles": [ "build:genomovar_chromosome:0" ], "sha256": "96931123b9de233ea33e66ecb81771c8d48d22b813c0ec167aa2ed254a214f81" }, { "bytes": 12, "path": "metadata/build/genomovar_chromosome/001.artifact", "roles": [ "build:genomovar_chromosome:1" ], "sha256": "bfff17ce9354b372251e0fcdbba1f0daf81ff94ccac67eb9349d2cff2724c60d" } ], "database_format": "skani-0.3.2-consolidated-bincode1", "databases": { "index.db": { "bytes": 16962, "path": "databases/genomovar_chromosome/index.db", "roles": [ "database:genomovar_chromosome:index.db" ], "sha256": "3d93da28e0544062d6dc415e731be32c1ff77126805b4cad73ba71998dcb44ac" }, "markers.bin": { "bytes": 6527673, "path": "databases/genomovar_chromosome/markers.bin", "roles": [ "database:genomovar_chromosome:markers.bin" ], "sha256": "f85f9f407688c6838809a40e64617584ec2d234a675323d95c898eebbd8e6aec" }, "sketches.db": { "bytes": 88221665, "path": "databases/genomovar_chromosome/sketches.db", "roles": [ "database:genomovar_chromosome:sketches.db" ], "sha256": "51d67cf660ceda051ede771890a6e176a1d65823982b09e05fa704e54fed3cf8" } }, "engine": "skani", "engine_version": "0.3.2", "reference_count": 173, "reference_role": "genomovar_definition_member", "sequence_scope": "historical_chromosome_record_set" }, "primary_whole": { "builds": [ { "bytes": 1740, "path": "metadata/build/primary_whole/000.artifact", "roles": [ "build:primary_whole:0" ], "sha256": "5fe47e2146a42d40094667f07562aaefc6d4730e464affd6427a52df11f198ce" }, { "bytes": 12, "path": "metadata/build/primary_whole/001.artifact", "roles": [ "build:primary_whole:1" ], "sha256": "bfff17ce9354b372251e0fcdbba1f0daf81ff94ccac67eb9349d2cff2724c60d" } ], "database_format": "skani-0.3.2-consolidated-bincode1", "databases": { "index.db": { "bytes": 12748, "path": "databases/primary_whole/index.db", "roles": [ "database:primary_whole:index.db" ], "sha256": "3123ec038d17f53a08c83005d5e3c0b8d9e33e3b28b35ee93590d2668580396b" }, "markers.bin": { "bytes": 5562948, "path": "databases/primary_whole/markers.bin", "roles": [ "database:primary_whole:markers.bin" ], "sha256": "7589c7eca707790a135015db7c409e08d817347c4479a1feaa693871f3b508f8" }, "sketches.db": { "bytes": 73466422, "path": "databases/primary_whole/sketches.db", "roles": [ "database:primary_whole:sketches.db" ], "sha256": "9be6a043222deec1b2975483f2d3b021a76935b0b0f13a327300119fa64e99ab" } }, "engine": "skani", "engine_version": "0.3.2", "reference_count": 140, "reference_role": "primary_named_reference_evidence", "sequence_scope": "whole_assembly_as_deposited" } }, "counts": { "context_lineage_concepts": 7, "development_context_records_not_packaged": 20, "eligible_cohort_records": 1070, "eligible_species_reference_represented": 1046, "genomovar_concepts": 25, "historical_chromosome_definition_references": 173, "named_concepts": 35, "primary_historical_type_accessions": 33, "primary_whole_references": 140, "reference_scope_records": 313, "unique_accessions": 305 }, "licence": { "ncbi_submitter_rights_disclaimer": "The reference sketches in this package were derived from assemblies obtained from NCBI databases. NCBI's molecular data usage policy states: \"some submitters of the original data (or the country of origin of such data) may claim patent, copyright, or other intellectual property rights in all or a portion of the data (that has been submitted). NCBI is not in a position to assess the validity of such claims and since there is no transfer of rights from submitters to NCBI, NCBI has no rights to transfer to a third party. Therefore, NCBI cannot provide comment or unrestricted permission concerning the use, copying, or distribution of the information contained in the molecular databases.\" Source: https://www.ncbi.nlm.nih.gov/home/about/policies/ (Molecular Data Usage), retrieved 2026-10-09.", "package_version": "2026-10-15", "schema_version": "2.0.0-reference-licence-manifest", "sha256": "bd5ec5711313bd1f457a9a36aa009fb0671b73c7f58cdf242ba1eed4ce1f6b94" }, "package": { "converted_from_sha256": null, "export_validation_sha256": "9abd37288a3a4594d8e0d04a82db7d198c906038f7f8a9814f7d97607994eb46", "id": "enterobacter-reference", "manifest_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "release_state": "public_reference_export", "schema_version": "2.1.0-public-portable-reference-package", "source_manifest_sha256": "f6e822072b532a5ae90a3d9e09b5d2e47a2f87dbf3cc69824e48ebd022a668c5", "trust_basis": "catalogue_pinned_manifest_digest_and_export_attestation", "version": "2026-10-15" }, "status": "verified" }, "rescue_status": "not_triggered", "schema": "3.0.0-conditional-assembly-report", "scope_assessment": { "outcome": "not_assessed", "reason": "No scope assessment supplied; coverage alone does not explain extra sequence." }, "settings_sha256": "a09608fda315c530db1f6699c4e25e3e6ac0c2b26cde26e60dbe9c467110089b", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "status": "assigned", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii", "subspecies_reason": "diagnostic_candidate_only", "thresholds": { "both_af_minimum": "80", "conflict_ani": "96", "species_ani": "96", "subspecies_ani": "98", "subspecies_margin_percentage_points": "1", "supplied": null, "trigger_lower_ani": "94.5" }, "top_references": [ { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "reference_id": "primary_whole:GCA_013738375.1", "reference_role": "diversity", "reference_sha256": "603ed679732e01cb7d1a06ec73d89a53fc12b6f6b22f071df5dee866cdf982b9", "skani": { "af_query_percent": 99.99, "af_reference_percent": 99.99, "ani_percent": 100.0 }, "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "tie_group": 0 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "reference_id": "primary_whole:GCA_001729745.1", "reference_role": "type_anchor", "reference_sha256": "c30376cf10d005baad5e405ffa7bfc93fa6575e86c4f9c8af33fb866b0661dba", "skani": { "af_query_percent": 82.69, "af_reference_percent": 92.17, "ani_percent": 98.97 }, "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "tie_group": 1 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "reference_id": "primary_whole:GCA_013625435.1", "reference_role": "diversity", "reference_sha256": "a0845ff9355766a769d9583c285d14c7d59e66fe6c9fc6ae67f2c0ad140c7da3", "skani": { "af_query_percent": 85.66, "af_reference_percent": 90.75, "ani_percent": 98.97 }, "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "tie_group": 1 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "reference_id": "primary_whole:GCA_052922205.1", "reference_role": "type_anchor", "reference_sha256": "1ba5d6a2314707d43860d60c7ca17b34fe846574a2d6bbe015dbaf7d0b9af1f1", "skani": { "af_query_percent": 85.51, "af_reference_percent": 91.21, "ani_percent": 98.97 }, "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "tie_group": 1 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "reference_id": "primary_whole:GCA_027595125.1", "reference_role": "diversity", "reference_sha256": "ddc667e9e2c0cf266983795da29deb09ba27da18cf0cce0a5c80a18a305d2bfb", "skani": { "af_query_percent": 83.07, "af_reference_percent": 90.16, "ani_percent": 98.92 }, "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "tie_group": 2 } ], "trigger": false, "trigger_state": "at_or_above_96_v1_route", "validation_status": "not_yet_validated", "versions": { "anim_method": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "evidence_schema": "2.0.0-dev-evidence", "implementation": "0.0.0", "policy": "conservative-assembly-anim-v2", "policy_contract": "P1-r1", "reference_data": { "manifest_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "package_id": "enterobacter-reference", "package_version": "2026-10-15", "schema_version": "2.1.0-public-portable-reference-package" }, "report_schema": "3.0.0-conditional-assembly-report", "skani_engine_version": "0.3.2", "skani_method": "skani-0.3.2-avx2-content-order-dna-v2", "validation": "not_yet_validated" }, "witness": null, "witness_assessment": [ { "anim": null, "finished": false, "reference_id": "primary_whole:GCA_013743755.1", "skani": { "af_query_percent": 80.09, "af_reference_percent": 86.85, "ani_percent": 95.89 }, "strict_pass": false }, { "anim": null, "finished": false, "reference_id": "primary_whole:GCA_002204775.1", "skani": { "af_query_percent": 80.45, "af_reference_percent": 83.23, "ani_percent": 95.74 }, "strict_pass": false }, { "anim": null, "finished": false, "reference_id": "primary_whole:GCA_030411255.2", "skani": { "af_query_percent": 80.08, "af_reference_percent": 82.6, "ani_percent": 95.51 }, "strict_pass": false }, { "anim": null, "finished": false, "reference_id": "primary_whole:GCA_043965205.1", "skani": { "af_query_percent": 81.37, "af_reference_percent": 81.15, "ani_percent": 95.4 }, "strict_pass": false } ] }, { "anim_execution": { "amendment": "P1-ANIM-MUMMER4-r1", "cache": null, "configured_pair_timeout": null, "configured_query_budget": null, "diagnostic_origin": "generated", "execution_profile": "terobacter.anim-execution/2", "inherited_restrictions": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_mib": null, "method_profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "not_run_reference_ids": [], "pair_seconds": null, "pair_workers": 1, "pairs": [ { "directory": "/tmp/ptero-public-examples/pinned-example/batch-alignments/query-000002/pair-000001", "record": { "error": null, "execution": { "configured_pair_timeout": null, "effective_pair_timeout": null, "inherited": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_mib": null, "profile": "terobacter.anim-execution/2", "remaining_query_budget": null }, "method": { "amendment": "P1-ANIM-MUMMER4-r1", "build_sha256": "c8d6dbff6632d44e95dd6d64a1369e612cc955dc7f6f607e783c025e945982e8", "compiler": "c++ (GCC) 11.5.0 20240719 (Red Hat 11.5.0-14)", "filter_rng": "private glibc-compatible seed-1 stream per orientation; one-to-one flag1to1(-1,100)", "implementation_sha256": "fab364d8fb58f97d3e517644e54f9b352b642cb751ee0a475fbc3c4b5731fe01", "implementation_version": "0.0.0", "memory_policy": "Linux: RLIMIT_AS; macOS: Mach peak RSS watchdog at 10 ms; failures retained", "parser_sha256": "2e871a07c72a194f3bff88fd9ce267c766d47dce876d1d735ea95a6f502c07a1", "profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "query_threads": 1, "reference_n_policy": "preserved; literal character identity; known long-N limitation", "source_sha256": "3ee5c94d33e0f32334171054e83ea71489e42e1de2d54a6c932373b5f8f2727f", "target": "x86_64-unknown-linux-gnu", "upstream_commit": "eb734606f2d516f42a0e0dce7a116bfb88ec1ebf" }, "orientations": { "QR": { "error": null, "method_profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "metrics": { "D": 8546037, "E": 212384, "blocks": 255, "query_covered": 4270997, "query_length": 5027913, "reference_covered": 4270988, "reference_length": 4708215, "status": "aligned" }, "native_query_id": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "native_reference_id": "primary_whole:GCA_026344075.1", "receipt": { "argv": [ "/tmp/ptero-public-examples/target/release/ptero" ], "artifacts": { "limits.json": "b63b7379c671374fd76597e35fd0e2c03705d5934a5387b2317ba15f6d6ac263", "native.delta": "abb7863b618fcb3c6f85d114b2f0c8043ae49a4fa89ae556e1de572efa0fc006", "native.filter": "6eab6723dab287b80a688d748073a23f8f557585ab152258e70c3723d1d1d343", "request.json": "f6c16abde7c07a5d421210519e9a2d1cc611afc23f511f4071be04a7778e84c7", "worker.stderr": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", "worker.stdout": "c96aaf7d043d6f91daf604291b85741cc57ed1062394552c17d5a2ceee347466" }, "cpu_seconds": 9.248143, "environment": { "LC_ALL": "C", "TERO_INTERNAL_ANIM_WORKER": "1" }, "execution": { "effective": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_enforcement": "optional_RLIMIT_AS", "request": { "orientation_timeout": null, "pair": { "configured_pair_timeout": null, "effective_pair_timeout": null, "inherited": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_mib": null, "profile": "terobacter.anim-execution/2", "remaining_query_budget": null }, "pair_elapsed": { "nanos": 165233587, "secs": 0 } }, "tool_cpu_seconds": null }, "exit_code": 0, "implementation_sha256": "fab364d8fb58f97d3e517644e54f9b352b642cb751ee0a475fbc3c4b5731fe01", "native_error": null, "native_exit_code": 0, "peak_rss_bytes": 335544320, "signal": null, "stop_reason": null, "wall_seconds": 9.326363632, "worker_pid": 1290201 }, "status": "aligned" }, "RQ": { "error": null, "method_profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "metrics": { "D": 8543916, "E": 212132, "blocks": 257, "query_covered": 4270696, "query_length": 5027913, "reference_covered": 4269827, "reference_length": 4708215, "status": "aligned" }, "native_query_id": "primary_whole:GCA_026344075.1", "native_reference_id": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "receipt": { "argv": [ "/tmp/ptero-public-examples/target/release/ptero" ], "artifacts": { "limits.json": "ee282facaca86ee63d89c6078adb30dda4756c72727dee09fca6feaf35d777d8", "native.delta": "7005526cd18457c94952cfcb338b19811fd4aec67f5511e72e3d6e702275db45", "native.filter": "089d55ad23f84ef430e337fa9ca8a51f4e7428c0f23af91ff5480eabd658e94f", "request.json": "e5af1336fae841b65d7bd1b7784364976b1283104d94d8f0e1e167074577b4c5", "worker.stderr": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", "worker.stdout": "5fa794bdcfddf1b7928a0fffdcf25b878db395a18b84b88e3e3803af7785f3f3" }, "cpu_seconds": 6.845458, "environment": { "LC_ALL": "C", "TERO_INTERNAL_ANIM_WORKER": "1" }, "execution": { "effective": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_enforcement": "optional_RLIMIT_AS", "request": { "orientation_timeout": null, "pair": { "configured_pair_timeout": null, "effective_pair_timeout": null, "inherited": { "address_space": { "hard": null, "soft": null }, "cpu": { "hard": null, "soft": null }, "data": { "hard": null, "soft": null }, "file_size": { "hard": null, "soft": null }, "resident_set": { "hard": 67108864000, "soft": 67108864000 }, "stack": { "hard": null, "soft": 8388608 } }, "memory_mib": null, "profile": "terobacter.anim-execution/2", "remaining_query_budget": null }, "pair_elapsed": { "nanos": 493442164, "secs": 9 } }, "tool_cpu_seconds": null }, "exit_code": 0, "implementation_sha256": "fab364d8fb58f97d3e517644e54f9b352b642cb751ee0a475fbc3c4b5731fe01", "native_error": null, "native_exit_code": 0, "peak_rss_bytes": 335544320, "signal": null, "stop_reason": null, "wall_seconds": 6.902747608, "worker_pid": 1292672 }, "status": "aligned" } }, "query": { "component": "query-whole-assembly", "concept_ids": [], "id": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "native_sha256": "9cc32709129699dd6e7b86130b9b0293dc59a31324955fd812d97e7c6f15c5d1", "record_lengths": { "CP143680.1": 5027913 }, "scope": "whole_assembly", "sha256": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "total_bases": 5027913 }, "reference": { "component": "primary_whole", "concept_ids": [ "ECTX-SP014" ], "id": "primary_whole:GCA_026344075.1", "native_sha256": "16e693917f754bd903b396be45afa68b153b63cee4c6b6e3e700b1e6804578dd", "record_lengths": { "JAPKNE010000001.1": 1417583, "JAPKNE010000002.1": 648402, "JAPKNE010000003.1": 603234, "JAPKNE010000004.1": 395227, "JAPKNE010000005.1": 287393, "JAPKNE010000006.1": 248570, "JAPKNE010000007.1": 214645, "JAPKNE010000008.1": 179715, "JAPKNE010000009.1": 142004, "JAPKNE010000010.1": 141706, "JAPKNE010000011.1": 102778, "JAPKNE010000012.1": 99842, "JAPKNE010000013.1": 79728, "JAPKNE010000014.1": 61997, "JAPKNE010000015.1": 28980, "JAPKNE010000016.1": 28605, "JAPKNE010000017.1": 26765, "JAPKNE010000018.1": 537, "JAPKNE010000019.1": 504 }, "scope": "whole_assembly", "sha256": "87a4e696dd22f9d3525ca5f877424cdb85264a74ef8846bb4a42b5d3ec3e53be", "total_bases": 4708215 }, "schema": "terobacter-anim-pair-v1", "status": "complete" }, "reference_id": "primary_whole:GCA_026344075.1", "stage": "witness", "status": "complete" } ], "query_seconds": null, "query_threads": 1, "reference_component": { "directory": "./database/enterobacter-reference/2026-10-15/primary-fasta", "licence_sha256": "bd5ec5711313bd1f457a9a36aa009fb0671b73c7f58cdf242ba1eed4ce1f6b94", "manifest_sha256": "02cd57a36119558ae62b93d8d87b1ef5563f3c8009040fa0867da13027ad195d", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28" }, "stop_reason": "plan_complete", "wall_seconds": 17.590149648 }, "anim_plan": { "anim_executed": false, "blocking_reasons": [], "contract_revision": "P1-r1", "counts": { "attempted": 1, "completed": 1, "failed": 0, "missing_orientation": 0, "no_alignment": 0, "not_run": 0, "required": 1, "supplied_outside_plan": 0, "unit": "reciprocal_pair" }, "decisive_vetoes": [], "implementation": { "name": "pterobacter", "version": "0.0.0" }, "input": { "anim": { "binding": "supplied_records", "bound_pairs": [ "primary_whole:GCA_026344075.1" ], "excluded": [], "method_profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "other_query_records": 0, "source": "supplied_saved_records", "unattributed_records": 0 }, "engine_version": "0.3.2", "evidence_schema": "2.0.0-dev-evidence", "evidence_sha256": "b801c8ca941599167b057f88ffe6a8316a3d32bd0dfdc1362b4aa680e1e8c9c3", "kind": "assembly", "mask": { "assessed_panel_reference_count": 140, "excluded_reference_ids": [], "panel_reference_count": 140 }, "primary_inventory_sha256": "254ae64f778017decf384eb946997722f73f9ae25e1001fc25cd1eb7f72b305b", "query_sha256": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "verification": "pure_contract_checks; external_artifacts_and_origin_require_file_wrapper" }, "known_challenges": [], "max_skani_ani_percent": 94.83, "nearest_parent": { "concept_id": "ECTX-SP014", "kind": "species", "name": "Enterobacter nematophilus" }, "outstanding_competitors": [], "outstanding_witnesses": [], "passing_witness": null, "policy_id": "conservative-assembly-anim-v2", "policy_mode": "default_candidate", "requested_pairs": [ { "reference_id": "primary_whole:GCA_026344075.1", "reference_sha256": "87a4e696dd22f9d3525ca5f877424cdb85264a74ef8846bb4a42b5d3ec3e53be", "stage": "witness", "status": "measured" } ], "schema": "terobacter.rescue-plan/1", "settings_sha256": "a09608fda315c530db1f6699c4e25e3e6ac0c2b26cde26e60dbe9c467110089b", "stage": "witness", "thresholds": { "both_af_minimum": "80", "conflict_ani": "96", "species_ani": "96", "subspecies_ani": "98", "subspecies_margin_percentage_points": "1", "supplied": null, "trigger_lower_ani": "94.5" }, "trigger": true, "trigger_state": "triggered_with_witness_candidate", "validation_status": "not_yet_validated", "witness_candidates": [ { "reference_id": "primary_whole:GCA_026344075.1", "reference_sha256": "87a4e696dd22f9d3525ca5f877424cdb85264a74ef8846bb4a42b5d3ec3e53be", "skani": { "af_query_percent": 82.65, "af_reference_percent": 88.26, "ani_percent": 94.83 } } ] }, "call_basis": null, "challenge_evidence": [], "challenges": [], "competitor_evaluation": "not_required_no_witness", "contract_revision": "P1-r1", "counts": { "attempted": 1, "completed": 1, "failed": 0, "missing_orientation": 0, "no_alignment": 0, "not_run": 0, "required": 1, "supplied_outside_plan": 0, "unit": "reciprocal_pair" }, "data_provenance": { "anim_evidence_directory": "batch-alignments", "anim_manifest_sha256": "02cd57a36119558ae62b93d8d87b1ef5563f3c8009040fa0867da13027ad195d", "anim_trust": "embedded_catalogue", "catalogue_sha256": "873353f91dee10efc5f41ec86daceeeb5a6e841e97e885fdd7912853dda25ff9", "citation": { "doi": "10.6084/m9.figshare.34640883.v1", "record_version": 1, "title": "Enterobacter reference database for Pterobacter, version 2026-10-15", "url": "https://figshare.com/articles/dataset/Enterobacter_reference_database_for_Pterobacter_version_2026-10-15/34640883" }, "database": "enterobacter-reference", "mlst_manifest_sha256": "0f0a4bd051e7a29d97f530a38982026df10ca223805e7b0147b19796763978dd", "mlst_requested": true, "mlst_trust": "embedded_catalogue", "reference_manifest_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "reference_trust": "embedded_catalogue", "status": "published", "version": "2026-10-15" }, "evaluation_status": "complete", "evidence": { "assignment": { "genomovar_id": null, "lineage_id": null, "reason": "native_decision_pending", "species_id": null, "species_name": null, "status": "not_evaluated", "subspecies_id": null, "subspecies_name": null }, "duplicate_rows_collapsed": 0, "evidence_status": "estimates_returned", "input_kind": "assembly", "nearest_reference_ids": [ "primary_whole:GCA_026344075.1" ], "not_returned_reference_count": 0, "provenance": { "engine_version": "0.3.2", "input_kind": "assembly", "query_sha256": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "reference_component_id": "primary_whole", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "search_exit_code": 0, "sequence_scope": "whole_assembly_as_supplied" }, "ranked_reference_evidence": [ { "aligned_fraction_query_percent": 82.65, "aligned_fraction_reference_percent": 88.26, "ani_percent": 94.83, "lineage_id": "", "minimum_directional_af_percent": 82.65, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_026344075.1", "reference_role": "type_anchor", "species_id": "ECTX-SP014", "species_name": "Enterobacter nematophilus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 80.89, "aligned_fraction_reference_percent": 85.57, "ani_percent": 94.31, "lineage_id": "", "minimum_directional_af_percent": 80.89, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031218175.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 80.33, "aligned_fraction_reference_percent": 86.03, "ani_percent": 94.30, "lineage_id": "", "minimum_directional_af_percent": 80.33, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043970685.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 81.06, "aligned_fraction_reference_percent": 85.68, "ani_percent": 94.18, "lineage_id": "", "minimum_directional_af_percent": 81.06, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043967505.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 80.54, "aligned_fraction_reference_percent": 84.03, "ani_percent": 94.06, "lineage_id": "", "minimum_directional_af_percent": 80.54, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043966825.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 81.49, "aligned_fraction_reference_percent": 81.33, "ani_percent": 94.05, "lineage_id": "", "minimum_directional_af_percent": 81.33, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019046905.1", "reference_role": "type_anchor", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 81.91, "aligned_fraction_reference_percent": 86.69, "ani_percent": 94.04, "lineage_id": "", "minimum_directional_af_percent": 81.91, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004804395.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 81.54, "aligned_fraction_reference_percent": 84.45, "ani_percent": 94.04, "lineage_id": "", "minimum_directional_af_percent": 81.54, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053165385.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 81.38, "aligned_fraction_reference_percent": 84.18, "ani_percent": 94.04, "lineage_id": "", "minimum_directional_af_percent": 81.38, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_054382355.1", "reference_role": "diversity", "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 77.79, "aligned_fraction_reference_percent": 79.51, "ani_percent": 93.37, "lineage_id": "", "minimum_directional_af_percent": 77.79, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_039718975.1", "reference_role": "diversity", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 77.22, "aligned_fraction_reference_percent": 83.80, "ani_percent": 93.26, "lineage_id": "", "minimum_directional_af_percent": 77.22, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003594915.1", "reference_role": "type_anchor", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 77.26, "aligned_fraction_reference_percent": 81.06, "ani_percent": 93.26, "lineage_id": "", "minimum_directional_af_percent": 77.26, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045348695.1", "reference_role": "diversity", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 78.55, "aligned_fraction_reference_percent": 76.37, "ani_percent": 93.14, "lineage_id": "", "minimum_directional_af_percent": 76.37, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045278925.1", "reference_role": "diversity", "species_id": "ECTX-SP007", "species_name": "Enterobacter chuandaensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 77.03, "aligned_fraction_reference_percent": 79.38, "ani_percent": 92.48, "lineage_id": "", "minimum_directional_af_percent": 77.03, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_035556915.2", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 76.46, "aligned_fraction_reference_percent": 80.70, "ani_percent": 92.39, "lineage_id": "", "minimum_directional_af_percent": 76.46, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031851495.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 70.86, "aligned_fraction_reference_percent": 77.01, "ani_percent": 92.37, "lineage_id": "", "minimum_directional_af_percent": 70.86, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_013784425.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.24, "aligned_fraction_reference_percent": 75.58, "ani_percent": 92.35, "lineage_id": "", "minimum_directional_af_percent": 72.24, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001521715.1", "reference_role": "type_anchor", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 74.00, "aligned_fraction_reference_percent": 81.69, "ani_percent": 92.34, "lineage_id": "", "minimum_directional_af_percent": 74.00, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_008364625.2", "reference_role": "type_anchor", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.92, "aligned_fraction_reference_percent": 74.77, "ani_percent": 92.34, "lineage_id": "", "minimum_directional_af_percent": 72.92, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_034331165.2", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.70, "aligned_fraction_reference_percent": 72.48, "ani_percent": 92.14, "lineage_id": "", "minimum_directional_af_percent": 72.48, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_025999975.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.73, "aligned_fraction_reference_percent": 69.05, "ani_percent": 91.99, "lineage_id": "", "minimum_directional_af_percent": 69.05, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_052569525.1", "reference_role": "diversity", "species_id": "ECTX-SP002", "species_name": "Enterobacter asburiae", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.69, "aligned_fraction_reference_percent": 77.27, "ani_percent": 91.98, "lineage_id": "", "minimum_directional_af_percent": 72.69, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_030406165.1", "reference_role": "diversity", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.44, "aligned_fraction_reference_percent": 75.70, "ani_percent": 91.97, "lineage_id": "", "minimum_directional_af_percent": 72.44, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_007035975.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.46, "aligned_fraction_reference_percent": 77.72, "ani_percent": 91.91, "lineage_id": "", "minimum_directional_af_percent": 72.46, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004006055.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.35, "aligned_fraction_reference_percent": 81.41, "ani_percent": 91.89, "lineage_id": "", "minimum_directional_af_percent": 72.35, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_040834095.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.67, "aligned_fraction_reference_percent": 76.94, "ani_percent": 91.86, "lineage_id": "", "minimum_directional_af_percent": 73.67, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_030406125.1", "reference_role": "diversity", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.45, "aligned_fraction_reference_percent": 75.37, "ani_percent": 91.85, "lineage_id": "", "minimum_directional_af_percent": 73.45, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729805.1", "reference_role": "type_anchor", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 73.49, "aligned_fraction_reference_percent": 73.06, "ani_percent": 91.84, "lineage_id": "", "minimum_directional_af_percent": 73.06, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045866555.1", "reference_role": "diversity", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.38, "aligned_fraction_reference_percent": 78.92, "ani_percent": 91.83, "lineage_id": "", "minimum_directional_af_percent": 72.38, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_028735835.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 74.34, "aligned_fraction_reference_percent": 74.17, "ani_percent": 91.83, "lineage_id": "", "minimum_directional_af_percent": 74.17, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_047116295.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 73.51, "aligned_fraction_reference_percent": 76.86, "ani_percent": 91.82, "lineage_id": "", "minimum_directional_af_percent": 73.51, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_021347605.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 73.03, "aligned_fraction_reference_percent": 75.48, "ani_percent": 91.81, "lineage_id": "", "minimum_directional_af_percent": 73.03, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_026420145.1", "reference_role": "type_anchor", "species_id": "ECTX-SP017", "species_name": "Enterobacter pseudoroggenkampii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 71.60, "aligned_fraction_reference_percent": 78.42, "ani_percent": 91.79, "lineage_id": "", "minimum_directional_af_percent": 71.60, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_008364555.1", "reference_role": "type_anchor", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.41, "aligned_fraction_reference_percent": 73.01, "ani_percent": 91.79, "lineage_id": "", "minimum_directional_af_percent": 72.41, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_014490845.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 70.79, "aligned_fraction_reference_percent": 71.83, "ani_percent": 91.78, "lineage_id": "", "minimum_directional_af_percent": 70.79, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_009184765.2", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 72.01, "aligned_fraction_reference_percent": 78.88, "ani_percent": 91.77, "lineage_id": "", "minimum_directional_af_percent": 72.01, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004355165.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.41, "aligned_fraction_reference_percent": 72.53, "ani_percent": 91.77, "lineage_id": "", "minimum_directional_af_percent": 72.41, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019968805.1", "reference_role": "diversity", "species_id": "ECTX-SP023", "species_name": "Enterobacter vonholyi", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 74.03, "aligned_fraction_reference_percent": 76.21, "ani_percent": 91.77, "lineage_id": "", "minimum_directional_af_percent": 74.03, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_052974775.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 72.07, "aligned_fraction_reference_percent": 73.37, "ani_percent": 91.76, "lineage_id": "", "minimum_directional_af_percent": 72.07, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_014490825.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 73.90, "aligned_fraction_reference_percent": 76.98, "ani_percent": 91.74, "lineage_id": "", "minimum_directional_af_percent": 73.90, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_002952735.2", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 70.28, "aligned_fraction_reference_percent": 71.53, "ani_percent": 91.71, "lineage_id": "", "minimum_directional_af_percent": 70.28, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030410235.2", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS006", "subspecies_name": "Enterobacter roggenkampii subsp. roggenkampii" }, { "aligned_fraction_query_percent": 71.86, "aligned_fraction_reference_percent": 75.18, "ani_percent": 91.68, "lineage_id": "", "minimum_directional_af_percent": 71.86, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001039365.2", "reference_role": "type_anchor", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 72.80, "aligned_fraction_reference_percent": 77.81, "ani_percent": 91.66, "lineage_id": "", "minimum_directional_af_percent": 72.80, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_040059225.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 71.07, "aligned_fraction_reference_percent": 72.52, "ani_percent": 91.63, "lineage_id": "", "minimum_directional_af_percent": 71.07, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001729765.1", "reference_role": "type_anchor", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 71.44, "aligned_fraction_reference_percent": 68.84, "ani_percent": 91.63, "lineage_id": "", "minimum_directional_af_percent": 68.84, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001984825.2", "reference_role": "type_anchor", "species_id": "ECTX-SP005", "species_name": "Enterobacter chengduensis", "subspecies_id": "ECTX-SS001", "subspecies_name": "Enterobacter chengduensis subsp. chengduensis" }, { "aligned_fraction_query_percent": 72.40, "aligned_fraction_reference_percent": 66.54, "ani_percent": 91.61, "lineage_id": "", "minimum_directional_af_percent": 66.54, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_019968825.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 71.84, "aligned_fraction_reference_percent": 76.65, "ani_percent": 91.60, "lineage_id": "", "minimum_directional_af_percent": 71.84, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_029542725.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 72.54, "aligned_fraction_reference_percent": 77.16, "ani_percent": 91.60, "lineage_id": "", "minimum_directional_af_percent": 72.54, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_043972695.1", "reference_role": "diversity", "species_id": "ECTX-SP019", "species_name": "Enterobacter roggenkampii", "subspecies_id": "ECTX-SS005", "subspecies_name": "Enterobacter roggenkampii subsp. quasiroggenkampii" }, { "aligned_fraction_query_percent": 69.55, "aligned_fraction_reference_percent": 70.69, "ani_percent": 91.57, "lineage_id": "", "minimum_directional_af_percent": 69.55, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_034008275.1", "reference_role": "type_anchor", "species_id": "ECTX-SP005", "species_name": "Enterobacter chengduensis", "subspecies_id": "ECTX-SS002", "subspecies_name": "Enterobacter chengduensis subsp. rongchengensis" }, { "aligned_fraction_query_percent": 71.89, "aligned_fraction_reference_percent": 71.04, "ani_percent": 91.57, "lineage_id": "", "minimum_directional_af_percent": 71.04, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_043971375.1", "reference_role": "diversity", "species_id": "ECTX-SP005", "species_name": "Enterobacter chengduensis", "subspecies_id": "ECTX-SS001", "subspecies_name": "Enterobacter chengduensis subsp. chengduensis" }, { "aligned_fraction_query_percent": 74.57, "aligned_fraction_reference_percent": 75.83, "ani_percent": 91.54, "lineage_id": "", "minimum_directional_af_percent": 74.57, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053698735.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 71.08, "aligned_fraction_reference_percent": 75.81, "ani_percent": 91.49, "lineage_id": "", "minimum_directional_af_percent": 71.08, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045278755.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.69, "aligned_fraction_reference_percent": 73.45, "ani_percent": 91.39, "lineage_id": "", "minimum_directional_af_percent": 72.69, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053699365.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 72.90, "aligned_fraction_reference_percent": 70.94, "ani_percent": 91.23, "lineage_id": "", "minimum_directional_af_percent": 70.94, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003665375.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.92, "aligned_fraction_reference_percent": 68.82, "ani_percent": 91.15, "lineage_id": "", "minimum_directional_af_percent": 68.82, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_015137465.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 70.41, "aligned_fraction_reference_percent": 73.06, "ani_percent": 91.11, "lineage_id": "", "minimum_directional_af_percent": 70.41, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_034008295.1", "reference_role": "type_anchor", "species_id": "ECTX-SP006", "species_name": "Enterobacter chinensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.28, "aligned_fraction_reference_percent": 68.08, "ani_percent": 91.02, "lineage_id": "", "minimum_directional_af_percent": 68.08, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_015135855.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 73.61, "aligned_fraction_reference_percent": 68.96, "ani_percent": 90.98, "lineage_id": "", "minimum_directional_af_percent": 68.96, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_008931545.1", "reference_role": "diversity", "species_id": "ECTX-SP011", "species_name": "Enterobacter kobei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 66.97, "aligned_fraction_reference_percent": 68.21, "ani_percent": 90.82, "lineage_id": "", "minimum_directional_af_percent": 66.97, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_042434935.1", "reference_role": "diversity", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 66.82, "aligned_fraction_reference_percent": 71.30, "ani_percent": 90.78, "lineage_id": "", "minimum_directional_af_percent": 66.82, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_009036245.1", "reference_role": "diversity", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 64.24, "aligned_fraction_reference_percent": 68.61, "ani_percent": 90.68, "lineage_id": "", "minimum_directional_af_percent": 64.24, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003964905.1", "reference_role": "type_anchor", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 65.03, "aligned_fraction_reference_percent": 66.88, "ani_percent": 90.58, "lineage_id": "", "minimum_directional_af_percent": 65.03, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_002939185.1", "reference_role": "type_anchor", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 63.43, "aligned_fraction_reference_percent": 65.84, "ani_percent": 90.58, "lineage_id": "", "minimum_directional_af_percent": 63.43, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_022014715.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 64.90, "aligned_fraction_reference_percent": 63.62, "ani_percent": 90.58, "lineage_id": "", "minimum_directional_af_percent": 63.62, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_054382275.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 66.21, "aligned_fraction_reference_percent": 66.45, "ani_percent": 90.52, "lineage_id": "", "minimum_directional_af_percent": 66.21, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043964395.1", "reference_role": "diversity", "species_id": "ECTX-SP021", "species_name": "Enterobacter sichuanensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 65.51, "aligned_fraction_reference_percent": 67.43, "ani_percent": 90.49, "lineage_id": "", "minimum_directional_af_percent": 65.51, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_977007405.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 63.21, "aligned_fraction_reference_percent": 66.39, "ani_percent": 90.33, "lineage_id": "", "minimum_directional_af_percent": 63.21, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_025244905.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 65.02, "aligned_fraction_reference_percent": 66.26, "ani_percent": 90.33, "lineage_id": "", "minimum_directional_af_percent": 65.02, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043973405.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 62.84, "aligned_fraction_reference_percent": 66.28, "ani_percent": 90.16, "lineage_id": "", "minimum_directional_af_percent": 62.84, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_051517475.1", "reference_role": "diversity", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 59.79, "aligned_fraction_reference_percent": 60.61, "ani_percent": 90.02, "lineage_id": "", "minimum_directional_af_percent": 59.79, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_000211415.1", "reference_role": "type_anchor", "species_id": "ECTX-SP013", "species_name": "Enterobacter mori", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 60.60, "aligned_fraction_reference_percent": 63.03, "ani_percent": 90.02, "lineage_id": "", "minimum_directional_af_percent": 60.60, "name_status": "provisional_name_not_validly_published", "reference_id": "primary_whole:GCA_023023105.1", "reference_role": "diversity", "species_id": "ECTX-SP001", "species_name": "Enterobacter adelaidei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.49, "aligned_fraction_reference_percent": 60.10, "ani_percent": 89.63, "lineage_id": "", "minimum_directional_af_percent": 58.49, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004331265.1", "reference_role": "type_anchor", "species_id": "ECTX-SP024", "species_name": "Enterobacter wuhouensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 59.75, "aligned_fraction_reference_percent": 62.30, "ani_percent": 89.63, "lineage_id": "", "minimum_directional_af_percent": 59.75, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_035835995.1", "reference_role": "diversity", "species_id": "ECTX-SP024", "species_name": "Enterobacter wuhouensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.62, "aligned_fraction_reference_percent": 59.76, "ani_percent": 89.62, "lineage_id": "", "minimum_directional_af_percent": 58.62, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_050847275.1", "reference_role": "diversity", "species_id": "ECTX-SP024", "species_name": "Enterobacter wuhouensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 61.31, "aligned_fraction_reference_percent": 62.04, "ani_percent": 89.51, "lineage_id": "", "minimum_directional_af_percent": 61.31, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_000235765.3", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 55.82, "aligned_fraction_reference_percent": 60.21, "ani_percent": 89.45, "lineage_id": "", "minimum_directional_af_percent": 55.82, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729785.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 62.15, "aligned_fraction_reference_percent": 59.49, "ani_percent": 89.45, "lineage_id": "", "minimum_directional_af_percent": 59.49, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043972705.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 61.28, "aligned_fraction_reference_percent": 62.22, "ani_percent": 89.44, "lineage_id": "", "minimum_directional_af_percent": 61.28, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_024599795.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 59.19, "aligned_fraction_reference_percent": 61.99, "ani_percent": 89.44, "lineage_id": "", "minimum_directional_af_percent": 59.19, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_040892575.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 55.31, "aligned_fraction_reference_percent": 61.17, "ani_percent": 89.40, "lineage_id": "", "minimum_directional_af_percent": 55.31, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031852185.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.93, "aligned_fraction_reference_percent": 56.71, "ani_percent": 89.39, "lineage_id": "", "minimum_directional_af_percent": 54.93, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_054871305.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 55.26, "aligned_fraction_reference_percent": 56.63, "ani_percent": 89.38, "lineage_id": "", "minimum_directional_af_percent": 55.26, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030848125.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 56.10, "aligned_fraction_reference_percent": 59.71, "ani_percent": 89.37, "lineage_id": "", "minimum_directional_af_percent": 56.10, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729705.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 56.20, "aligned_fraction_reference_percent": 59.09, "ani_percent": 89.37, "lineage_id": "", "minimum_directional_af_percent": 56.20, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729725.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 55.52, "aligned_fraction_reference_percent": 56.84, "ani_percent": 89.36, "lineage_id": "", "minimum_directional_af_percent": 55.52, "name_status": "validly_published_synonym", "reference_id": "primary_whole:GCA_039734725.2", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 56.46, "aligned_fraction_reference_percent": 59.03, "ani_percent": 89.34, "lineage_id": "", "minimum_directional_af_percent": 56.46, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013743755.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 58.60, "aligned_fraction_reference_percent": 59.91, "ani_percent": 89.34, "lineage_id": "", "minimum_directional_af_percent": 58.60, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_020540925.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 56.51, "aligned_fraction_reference_percent": 58.55, "ani_percent": 89.31, "lineage_id": "", "minimum_directional_af_percent": 56.51, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013743295.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 55.56, "aligned_fraction_reference_percent": 57.42, "ani_percent": 89.30, "lineage_id": "", "minimum_directional_af_percent": 55.56, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_025369895.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 56.22, "aligned_fraction_reference_percent": 57.82, "ani_percent": 89.29, "lineage_id": "", "minimum_directional_af_percent": 56.22, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013731155.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 55.33, "aligned_fraction_reference_percent": 56.94, "ani_percent": 89.28, "lineage_id": "", "minimum_directional_af_percent": 55.33, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030848005.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 60.37, "aligned_fraction_reference_percent": 60.43, "ani_percent": 89.26, "lineage_id": "", "minimum_directional_af_percent": 60.37, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_905331265.2", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 55.41, "aligned_fraction_reference_percent": 56.67, "ani_percent": 89.25, "lineage_id": "", "minimum_directional_af_percent": 55.41, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019048245.1", "reference_role": "type_anchor", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.62, "aligned_fraction_reference_percent": 53.31, "ani_percent": 89.25, "lineage_id": "", "minimum_directional_af_percent": 53.31, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053691555.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 55.84, "aligned_fraction_reference_percent": 56.35, "ani_percent": 89.23, "lineage_id": "", "minimum_directional_af_percent": 55.84, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_051091715.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 57.61, "aligned_fraction_reference_percent": 57.50, "ani_percent": 89.22, "lineage_id": "", "minimum_directional_af_percent": 57.50, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003594935.2", "reference_role": "type_anchor", "species_id": "ECTX-SP010", "species_name": "Enterobacter huaxiensis", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.29, "aligned_fraction_reference_percent": 57.33, "ani_percent": 89.22, "lineage_id": "", "minimum_directional_af_percent": 55.29, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013726395.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS008", "subspecies_name": "Enterobacter xiangfangensis subsp. oharae" }, { "aligned_fraction_query_percent": 55.31, "aligned_fraction_reference_percent": 57.75, "ani_percent": 89.22, "lineage_id": "", "minimum_directional_af_percent": 55.31, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_028890245.1", "reference_role": "type_anchor", "species_id": "ECTX-SP016", "species_name": "Enterobacter pasteurii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.55, "aligned_fraction_reference_percent": 60.23, "ani_percent": 89.21, "lineage_id": "", "minimum_directional_af_percent": 54.55, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_004331385.1", "reference_role": "type_anchor", "species_id": "ECTX-SP018", "species_name": "Enterobacter quasihormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.07, "aligned_fraction_reference_percent": 56.56, "ani_percent": 89.21, "lineage_id": "", "minimum_directional_af_percent": 55.07, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_032389435.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 59.38, "aligned_fraction_reference_percent": 61.70, "ani_percent": 89.20, "lineage_id": "", "minimum_directional_af_percent": 59.38, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_009660455.1", "reference_role": "type_anchor", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 55.95, "aligned_fraction_reference_percent": 55.58, "ani_percent": 89.20, "lineage_id": "", "minimum_directional_af_percent": 55.58, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_013376835.1", "reference_role": "diversity", "species_id": "ECTX-SP016", "species_name": "Enterobacter pasteurii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 61.28, "aligned_fraction_reference_percent": 61.55, "ani_percent": 89.19, "lineage_id": "", "minimum_directional_af_percent": 61.28, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_016864115.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS004", "subspecies_name": "Enterobacter cloacae subsp. dissolvens" }, { "aligned_fraction_query_percent": 55.54, "aligned_fraction_reference_percent": 55.23, "ani_percent": 89.19, "lineage_id": "", "minimum_directional_af_percent": 55.23, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_030411255.2", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 58.69, "aligned_fraction_reference_percent": 52.70, "ani_percent": 89.18, "lineage_id": "", "minimum_directional_af_percent": 52.70, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_000025565.1", "reference_role": "type_anchor", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 58.34, "aligned_fraction_reference_percent": 57.66, "ani_percent": 89.18, "lineage_id": "", "minimum_directional_af_percent": 57.66, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_002303275.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 54.51, "aligned_fraction_reference_percent": 54.48, "ani_percent": 89.18, "lineage_id": "", "minimum_directional_af_percent": 54.48, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_045037665.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 53.39, "aligned_fraction_reference_percent": 55.94, "ani_percent": 89.18, "lineage_id": "", "minimum_directional_af_percent": 53.39, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_051092005.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 56.83, "aligned_fraction_reference_percent": 54.64, "ani_percent": 89.16, "lineage_id": "", "minimum_directional_af_percent": 54.64, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_043965205.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 54.93, "aligned_fraction_reference_percent": 59.04, "ani_percent": 89.14, "lineage_id": "", "minimum_directional_af_percent": 54.93, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_001729745.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 58.46, "aligned_fraction_reference_percent": 60.55, "ani_percent": 89.13, "lineage_id": "", "minimum_directional_af_percent": 58.46, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031851625.1", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 54.27, "aligned_fraction_reference_percent": 57.54, "ani_percent": 89.13, "lineage_id": "", "minimum_directional_af_percent": 54.27, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043973395.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.90, "aligned_fraction_reference_percent": 60.38, "ani_percent": 89.13, "lineage_id": "", "minimum_directional_af_percent": 58.90, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_046015535.2", "reference_role": "diversity", "species_id": "ECTX-SP008", "species_name": "Enterobacter cloacae", "subspecies_id": "ECTX-SS003", "subspecies_name": "Enterobacter cloacae subsp. cloacae" }, { "aligned_fraction_query_percent": 55.21, "aligned_fraction_reference_percent": 57.77, "ani_percent": 89.11, "lineage_id": "", "minimum_directional_af_percent": 55.21, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_027595125.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 56.24, "aligned_fraction_reference_percent": 52.74, "ani_percent": 89.11, "lineage_id": "", "minimum_directional_af_percent": 52.74, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_046097115.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 56.27, "aligned_fraction_reference_percent": 56.52, "ani_percent": 89.11, "lineage_id": "", "minimum_directional_af_percent": 56.27, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_053699795.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 54.26, "aligned_fraction_reference_percent": 55.42, "ani_percent": 89.09, "lineage_id": "", "minimum_directional_af_percent": 54.26, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013625435.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 56.59, "aligned_fraction_reference_percent": 55.32, "ani_percent": 89.09, "lineage_id": "", "minimum_directional_af_percent": 55.32, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_036936505.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 54.83, "aligned_fraction_reference_percent": 56.39, "ani_percent": 89.07, "lineage_id": "", "minimum_directional_af_percent": 54.83, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_052922205.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 55.51, "aligned_fraction_reference_percent": 55.37, "ani_percent": 89.05, "lineage_id": "", "minimum_directional_af_percent": 55.37, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_002204775.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS010", "subspecies_name": "Enterobacter xiangfangensis subsp. xiangfangensis" }, { "aligned_fraction_query_percent": 53.66, "aligned_fraction_reference_percent": 55.44, "ani_percent": 89.05, "lineage_id": "", "minimum_directional_af_percent": 53.66, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_053349035.1", "reference_role": "diversity", "species_id": "ECTX-SP009", "species_name": "Enterobacter hormaechei", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.67, "aligned_fraction_reference_percent": 59.02, "ani_percent": 89.04, "lineage_id": "", "minimum_directional_af_percent": 58.67, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_031851515.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 56.07, "aligned_fraction_reference_percent": 54.37, "ani_percent": 89.03, "lineage_id": "", "minimum_directional_af_percent": 54.37, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_050871265.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS009", "subspecies_name": "Enterobacter xiangfangensis subsp. steigerwaltii" }, { "aligned_fraction_query_percent": 55.01, "aligned_fraction_reference_percent": 56.89, "ani_percent": 89.00, "lineage_id": "", "minimum_directional_af_percent": 55.01, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_040096145.1", "reference_role": "type_anchor", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 58.58, "aligned_fraction_reference_percent": 60.73, "ani_percent": 88.94, "lineage_id": "", "minimum_directional_af_percent": 58.58, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_003071645.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.42, "aligned_fraction_reference_percent": 60.44, "ani_percent": 88.94, "lineage_id": "", "minimum_directional_af_percent": 58.42, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_043647335.2", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 55.43, "aligned_fraction_reference_percent": 54.17, "ani_percent": 88.91, "lineage_id": "", "minimum_directional_af_percent": 54.17, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_009834325.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 58.45, "aligned_fraction_reference_percent": 62.69, "ani_percent": 88.89, "lineage_id": "", "minimum_directional_af_percent": 58.45, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_029718255.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 59.37, "aligned_fraction_reference_percent": 60.27, "ani_percent": 88.83, "lineage_id": "", "minimum_directional_af_percent": 59.37, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001750725.1", "reference_role": "type_anchor", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 58.30, "aligned_fraction_reference_percent": 59.21, "ani_percent": 88.82, "lineage_id": "", "minimum_directional_af_percent": 58.30, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_035323105.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.53, "aligned_fraction_reference_percent": 52.57, "ani_percent": 88.80, "lineage_id": "", "minimum_directional_af_percent": 52.57, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_013738375.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 58.30, "aligned_fraction_reference_percent": 58.82, "ani_percent": 88.71, "lineage_id": "", "minimum_directional_af_percent": 58.30, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_050626905.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 54.49, "aligned_fraction_reference_percent": 54.14, "ani_percent": 88.70, "lineage_id": "", "minimum_directional_af_percent": 54.14, "name_status": "approved_project_subspecies_proposal_not_validated_combination", "reference_id": "primary_whole:GCA_052921675.1", "reference_role": "diversity", "species_id": "ECTX-SP025", "species_name": "Enterobacter xiangfangensis", "subspecies_id": "ECTX-SS007", "subspecies_name": "Enterobacter xiangfangensis subsp. hoffmannii" }, { "aligned_fraction_query_percent": 57.73, "aligned_fraction_reference_percent": 59.17, "ani_percent": 88.69, "lineage_id": "", "minimum_directional_af_percent": 57.73, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_029721015.1", "reference_role": "diversity", "species_id": "ECTX-SP012", "species_name": "Enterobacter ludwigii", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 50.18, "aligned_fraction_reference_percent": 56.36, "ani_percent": 88.65, "lineage_id": "", "minimum_directional_af_percent": 50.18, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_009176645.1", "reference_role": "type_anchor", "species_id": "ECTX-SP015", "species_name": "Enterobacter oligotrophicus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 47.84, "aligned_fraction_reference_percent": 49.88, "ani_percent": 87.98, "lineage_id": "", "minimum_directional_af_percent": 47.84, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_019047785.1", "reference_role": "type_anchor", "species_id": "ECTX-SP004", "species_name": "Enterobacter cancerogenus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 47.84, "aligned_fraction_reference_percent": 48.73, "ani_percent": 87.85, "lineage_id": "", "minimum_directional_af_percent": 47.84, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_904425455.1", "reference_role": "diversity", "species_id": "ECTX-SP004", "species_name": "Enterobacter cancerogenus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 47.63, "aligned_fraction_reference_percent": 49.93, "ani_percent": 87.66, "lineage_id": "", "minimum_directional_af_percent": 47.63, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_002850575.1", "reference_role": "diversity", "species_id": "ECTX-SP004", "species_name": "Enterobacter cancerogenus", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 43.10, "aligned_fraction_reference_percent": 44.30, "ani_percent": 87.15, "lineage_id": "", "minimum_directional_af_percent": 43.10, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_025152625.1", "reference_role": "diversity", "species_id": "ECTX-SP022", "species_name": "Enterobacter soli", "subspecies_id": "", "subspecies_name": "" }, { "aligned_fraction_query_percent": 41.97, "aligned_fraction_reference_percent": 42.56, "ani_percent": 86.70, "lineage_id": "", "minimum_directional_af_percent": 41.97, "name_status": "validly_published_correct_name", "reference_id": "primary_whole:GCA_001654845.1", "reference_role": "type_anchor", "species_id": "ECTX-SP022", "species_name": "Enterobacter soli", "subspecies_id": "", "subspecies_name": "" } ], "raw_hit_count": 140, "record_type": "development_evidence_only", "reference_count": 140, "schema_version": "2.0.0-dev-evidence", "unique_hit_count": 140, "units": { "aligned_fraction": "percent", "ani": "percent" } }, "execution": { "stage": "genomovar", "status": "complete" }, "external_problem_warnings": [], "genomovar": { "approval": { "accepted_addendum_sha256": "1616c88a4be5193b8e54b6ce3ec27fcee19d731dd375c2e7ad4c989db429df4f", "base_contract_sha256": "ae3eacf1a708a4c0fac18d81dc46df73c183d84accad4dd52e1c4a43de7e1b03", "by": "Michael", "date": "2026-10-08", "decision": "Q-GV-AF-01 option A", "source": "https://github.com/mbhall88/Enterobacter/issues/3#issuecomment-6056920803", "status": "approved" }, "compatible_groups": [], "detail": null, "genomovar_id": null, "groups": [], "incomplete_groups": [], "parent": { "blocking_reasons": [ "ANIm_no_strict_witness" ], "policy_id": "conservative-assembly-anim-v2", "policy_sha256": "4bf50abd9600250d5c66a3d0ddb94a70a4c88326a95a386c72a2a947dc053705", "query_sha256": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "result_sha256": "6d456f5a0eb94079b65393c4d2ac4497da8245351ee457358b657c0f7211048c", "scope_outcome": "not_assessed", "species_id": null, "status": "unresolved", "subspecies_id": null, "verified": false }, "policy_id": "p3a-genomovar-contract-r1", "policy_sha256": "2be813fc55756bd819aff0626a59063b4842f3fa86ec9a4cd9e80e276dc80185", "reasons": [ "absent_eligible_parent", "upstream_veto" ], "search": { "status": "not_run" }, "status": "withheld", "warnings": [] }, "genomovar_id": null, "implementation": { "name": "pterobacter", "version": "0.0.0" }, "input": { "anim": { "binding": "supplied_records", "bound_pairs": [ "primary_whole:GCA_026344075.1" ], "excluded": [], "method_profile": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "other_query_records": 0, "source": "generated_native_pairs", "unattributed_records": 0 }, "bytes": 5090827, "engine_version": "0.3.2", "evidence_schema": "2.0.0-dev-evidence", "evidence_sha256": "b801c8ca941599167b057f88ffe6a8316a3d32bd0dfdc1362b4aa680e1e8c9c3", "file": "GCA_043966805.1.fna", "kind": "assembly", "mask": { "assessed_panel_reference_count": 140, "excluded_reference_ids": [], "panel_reference_count": 140 }, "ordinal": 2, "primary_inventory_sha256": "254ae64f778017decf384eb946997722f73f9ae25e1001fc25cd1eb7f72b305b", "query_sha256": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "records": [ { "header": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "length": 5027913, "ordinal": 1, "sequence_sha256": "bd422b7eb5f26a0f5ec398f6df7b150cdcb8c8cb269029ad602f05be3eccb5c2" } ], "reference_package_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "sample_name": "ECC-219", "sequence_scope": "whole_assembly_as_supplied", "source": { "entry": "GCA_043966805.1.fna", "file": "samples.tsv", "kind": "sample_sheet", "line": 3 }, "total_bases": 5027913, "verification": "query_bytes_hashed; reference_package_verified" }, "legacy_v1_result": { "assignment_reason": "nearest_below_species_ANI", "policy_id": "conservative-assembly-v1", "reasons": [ "nearest_below_species_ANI" ], "species_id": null, "species_name": null, "status": "unresolved", "subspecies_id": null, "subspecies_name": null, "subspecies_reason": "parent_species_unresolved" }, "max_skani_ani_percent": 94.83, "measurement": { "engine_profile": "skani-0.3.2-avx2-content-order-dna-v2", "engine_revision": "22da4ae9e44b2e3e686c8e5c71fcd16cec2b9791", "engine_version": "0.3.2", "not_returned_reference_files": [], "reporting_floor_percent": 15, "rows": [ { "af_query": 82.65, "af_reference": 88.26, "ani": 94.83, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "JAPKNE010000001.1 Enterobacter nematophilus strain E-TC7 Strain6_1a_1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_026344075.1.fna" }, { "af_query": 80.89, "af_reference": 85.57, "ani": 94.31, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP110983.1 Enterobacter bugandensis strain E104107 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031218175.1.fna" }, { "af_query": 80.33, "af_reference": 86.03, "ani": 94.30, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143725.1 Enterobacter bugandensis strain ECC-105 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043970685.1.fna" }, { "af_query": 81.06, "af_reference": 85.68, "ani": 94.18, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143687.1 Enterobacter bugandensis strain ECC-190 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043967505.1.fna" }, { "af_query": 80.54, "af_reference": 84.03, "ani": 94.06, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143681.1 Enterobacter bugandensis strain ECC-209 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043966825.1.fna" }, { "af_query": 81.49, "af_reference": 81.33, "ani": 94.05, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP077206.1 Enterobacter bugandensis strain FDAARGOS 1427 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019046905.1.fna" }, { "af_query": 81.91, "af_reference": 86.69, "ani": 94.04, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP039452.1 Enterobacter bugandensis strain 1367 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004804395.1.fna" }, { "af_query": 81.54, "af_reference": 84.45, "ani": 94.04, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP163533.1 Enterobacter bugandensis strain YF-3 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053165385.1.fna" }, { "af_query": 81.38, "af_reference": 84.18, "ani": 94.04, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM136145.1 Enterobacter bugandensis strain 20TX0143 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_054382355.1.fna" }, { "af_query": 77.79, "af_reference": 79.51, "ani": 93.37, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP097173.1 Enterobacter chuandaensis strain E20191216 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_039718975.1.fna" }, { "af_query": 77.22, "af_reference": 83.80, "ani": 93.26, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "QZCS01000001.1 Enterobacter chuandaensis strain 090028 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003594915.1.fna" }, { "af_query": 77.26, "af_reference": 81.06, "ani": 93.26, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP162195.1 Enterobacter chuandaensis strain STK53-E chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045348695.1.fna" }, { "af_query": 78.55, "af_reference": 76.37, "ani": 93.14, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP135253.1 Enterobacter chuandaensis strain FAHZZU5885 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045278925.1.fna" }, { "af_query": 77.03, "af_reference": 79.38, "ani": 92.48, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP149853.1 Enterobacter asburiae strain 2024CK-00035 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_035556915.2.fna" }, { "af_query": 76.46, "af_reference": 80.70, "ani": 92.39, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP134642.1 Enterobacter asburiae strain 30A:C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031851495.1.fna" }, { "af_query": 70.86, "af_reference": 77.01, "ani": 92.37, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056716.1 Enterobacter asburiae strain RHBSTW-00516 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013784425.1.fna" }, { "af_query": 72.24, "af_reference": 75.58, "ani": 92.35, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP011863.1 Enterobacter asburiae strain ATCC 35953, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001521715.1.fna" }, { "af_query": 74.00, "af_reference": 81.69, "ani": 92.34, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP126604.1 Enterobacter dykesii strain E1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_008364625.2.fna" }, { "af_query": 72.92, "af_reference": 74.77, "ani": 92.34, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP174016.1 Enterobacter asburiae strain 2023CK-01510 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_034331165.2.fna" }, { "af_query": 73.70, "af_reference": 72.48, "ani": 92.14, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "AP026886.1 Enterobacter asburiae KAM576 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025999975.1.fna" }, { "af_query": 72.73, "af_reference": 69.05, "ani": 91.99, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP199517.1 Enterobacter asburiae strain x220589 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052569525.1.fna" }, { "af_query": 72.69, "af_reference": 77.27, "ani": 91.98, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP129026.1 Enterobacter pseudoroggenkampii strain FY158 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030406165.1.fna" }, { "af_query": 72.44, "af_reference": 75.70, "ani": 91.97, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "AP019634.1 Enterobacter sp. 18A13 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_007035975.1.fna" }, { "af_query": 72.46, "af_reference": 77.72, "ani": 91.91, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP034769.1 Enterobacter sp. N18-03635 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004006055.1.fna" }, { "af_query": 72.35, "af_reference": 81.41, "ani": 91.89, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP162152.1 Enterobacter vonholyi strain STK80-C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040834095.1.fna" }, { "af_query": 73.67, "af_reference": 76.94, "ani": 91.86, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP129025.1 Enterobacter pseudoroggenkampii strain SC1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030406125.1.fna" }, { "af_query": 73.45, "af_reference": 75.37, "ani": 91.85, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017184.1 Enterobacter roggenkampii strain DSM 16690, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729805.1.fna" }, { "af_query": 73.49, "af_reference": 73.06, "ani": 91.84, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "AP038752.1 Enterobacter pseudoroggenkampii GVv1 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045866555.1.fna" }, { "af_query": 72.38, "af_reference": 78.92, "ani": 91.83, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP117838.1 Enterobacter sp. S-33 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_028735835.1.fna" }, { "af_query": 74.34, "af_reference": 74.17, "ani": 91.83, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP128629.1 Enterobacter roggenkampii strain WL110 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_047116295.1.fna" }, { "af_query": 73.51, "af_reference": 76.86, "ani": 91.82, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP086201.1 Enterobacter roggenkampii strain F1057 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_021347605.1.fna" }, { "af_query": 73.03, "af_reference": 75.48, "ani": 91.81, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "JAPMLV010000001.1 Enterobacter pseudoroggenkampii strain 155092 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_026420145.1.fna" }, { "af_query": 71.60, "af_reference": 78.42, "ani": 91.79, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "VTUC01000008.1 Enterobacter vonholyi strain E13 NODE_10_length_141926_cov_60.4185, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_008364555.1.fna" }, { "af_query": 72.41, "af_reference": 73.01, "ani": 91.79, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP060737.1 Enterobacter roggenkampii isolate enterobacter cloacae chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_014490845.1.fna" }, { "af_query": 70.79, "af_reference": 71.83, "ani": 91.78, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP045064.2 Enterobacter roggenkampii strain WCHER090065 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009184765.2.fna" }, { "af_query": 72.01, "af_reference": 78.88, "ani": 91.77, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP037919.1 Enterobacter cloacae complex sp. strain N13-01531 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004355165.1.fna" }, { "af_query": 72.41, "af_reference": 72.53, "ani": 91.77, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP074159.1 Enterobacter sp. JBIWA005 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019968805.1.fna" }, { "af_query": 74.03, "af_reference": 76.21, "ani": 91.77, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP169395.1 Enterobacter sp. fkY84-4 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052974775.1.fna" }, { "af_query": 72.07, "af_reference": 73.37, "ani": 91.76, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP060733.1 Enterobacter roggenkampii strain Ed-982 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_014490825.1.fna" }, { "af_query": 73.90, "af_reference": 76.98, "ani": 91.74, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP025034.2 Enterobacter sp. SGAir0187 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002952735.2.fna" }, { "af_query": 70.28, "af_reference": 71.53, "ani": 91.71, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM130037.1 Enterobacter roggenkampii strain EB00178 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030410235.2.fna" }, { "af_query": 71.86, "af_reference": 75.18, "ani": 91.68, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "LFDQ02000010.1 Enterobacter quasiroggenkampii strain WCHECL1060 NODE_10_length_82615_cov_44.405, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001039365.2.fna" }, { "af_query": 72.80, "af_reference": 77.81, "ani": 91.66, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP157375.1 Enterobacter cloacae complex sp. Mu1197 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040059225.1.fna" }, { "af_query": 71.07, "af_reference": 72.52, "ani": 91.63, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017181.1 Enterobacter kobei strain DSM 13645 chromosome, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729765.1.fna" }, { "af_query": 71.44, "af_reference": 68.84, "ani": 91.63, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP043318.1 Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001984825.2.fna" }, { "af_query": 72.40, "af_reference": 66.54, "ani": 91.61, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP074170.1 Enterobacter sp. JBIWA003 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019968825.1.fna" }, { "af_query": 71.84, "af_reference": 76.65, "ani": 91.60, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP110533.1 Enterobacter quasiroggenkampii strain WS12-3 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_029542725.1.fna" }, { "af_query": 72.54, "af_reference": 77.16, "ani": 91.60, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143745.1 Enterobacter quasiroggenkampii strain ECC-072 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043972695.1.fna" }, { "af_query": 69.55, "af_reference": 70.69, "ani": 91.57, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "JARDVK010000001.1 Enterobacter rongchengensis strain 170250 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_034008275.1.fna" }, { "af_query": 71.89, "af_reference": 71.04, "ani": 91.57, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143738.1 Enterobacter chengduensis strain ECC-093 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043971375.1.fna" }, { "af_query": 74.57, "af_reference": 75.83, "ani": 91.54, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM132264.1 Enterobacter kobei strain 22AR0121 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053698735.1.fna" }, { "af_query": 71.08, "af_reference": 75.81, "ani": 91.49, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP133814.1 Enterobacter kobei strain EK1918 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045278755.1.fna" }, { "af_query": 72.69, "af_reference": 73.45, "ani": 91.39, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM132278.1 Enterobacter kobei strain 19AR1162 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053699365.1.fna" }, { "af_query": 72.90, "af_reference": 70.94, "ani": 91.23, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP032897.1 Enterobacter kobei strain WCHEK045523 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003665375.1.fna" }, { "af_query": 73.92, "af_reference": 68.82, "ani": 91.15, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "AP022498.1 Enterobacter kobei STN0717-53 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_015137465.1.fna" }, { "af_query": 70.41, "af_reference": 73.06, "ani": 91.11, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "JARDVI010000001.1 Enterobacter chinensis strain 170198 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_034008295.1.fna" }, { "af_query": 73.28, "af_reference": 68.08, "ani": 91.02, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "AP022446.1 Enterobacter kobei STW0522-60 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_015135855.1.fna" }, { "af_query": 73.61, "af_reference": 68.96, "ani": 90.98, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP042578.1 Enterobacter kobei strain C16 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_008931545.1.fna" }, { "af_query": 66.97, "af_reference": 68.21, "ani": 90.82, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP170190.1 Enterobacter sichuanensis strain B36 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_042434935.1.fna" }, { "af_query": 66.82, "af_reference": 71.30, "ani": 90.78, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP027986.1 Enterobacter sichuanensis strain SGAir0282 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009036245.1.fna" }, { "af_query": 64.24, "af_reference": 68.61, "ani": 90.68, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "RXRX01000001.1 Enterobacter quasimori strain 090044 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003964905.1.fna" }, { "af_query": 65.03, "af_reference": 66.88, "ani": 90.58, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "POVL01000001.1 Enterobacter sichuanensis strain WCHECL1597 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002939185.1.fna" }, { "af_query": 63.43, "af_reference": 65.84, "ani": 90.58, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP091779.1 Enterobacter mori strain ACYC.E9L chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_022014715.1.fna" }, { "af_query": 64.90, "af_reference": 63.62, "ani": 90.58, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM136141.1 Enterobacter mori strain 20WA0184 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_054382275.1.fna" }, { "af_query": 66.21, "af_reference": 66.45, "ani": 90.52, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143650.1 Enterobacter sichuanensis strain ECC-263 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043964395.1.fna" }, { "af_query": 65.51, "af_reference": 67.43, "ani": 90.49, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "OZ345835.1 Enterobacter mori strain R-92920 genome assembly, chromosome: 1", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_977007405.1.fna" }, { "af_query": 63.21, "af_reference": 66.39, "ani": 90.33, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP104285.1 Enterobacter mori strain JT.W3M11 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025244905.1.fna" }, { "af_query": 65.02, "af_reference": 66.26, "ani": 90.33, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143766.1 Enterobacter mori strain ECC-007 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043973405.1.fna" }, { "af_query": 62.84, "af_reference": 66.28, "ani": 90.16, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP195848.1 Enterobacter mori strain RYYT.gf44 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_051517475.1.fna" }, { "af_query": 59.79, "af_reference": 60.61, "ani": 90.02, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "GL890773.1 Enterobacter mori LMG 25706 genomic scaffold ENTMO1_scaffold1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_000211415.1.fna" }, { "af_query": 60.60, "af_reference": 63.03, "ani": 90.02, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP083824.1 Enterobacter ludwigii strain 11894-yvys chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_023023105.1.fna" }, { "af_query": 58.49, "af_reference": 60.10, "ani": 89.63, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "SJOO01000001.1 Enterobacter wuhouensis strain WCHEW120002 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004331265.1.fna" }, { "af_query": 59.75, "af_reference": 62.30, "ani": 89.63, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP142124.1 Enterobacter wuhouensis strain AV1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_035835995.1.fna" }, { "af_query": 58.62, "af_reference": 59.76, "ani": 89.62, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP193790.1 Enterobacter wuhouensis strain TMH.P3 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_050847275.1.fna" }, { "af_query": 61.31, "af_reference": 62.04, "ani": 89.51, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP003678.1 Enterobacter cloacae subsp. dissolvens SDM, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_000235765.3.fna" }, { "af_query": 55.82, "af_reference": 60.21, "ani": 89.45, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017183.1 Enterobacter hormaechei subsp. xiangfangensis strain LMG27195 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729785.1.fna" }, { "af_query": 62.15, "af_reference": 59.49, "ani": 89.45, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143746.1 Enterobacter cloacae subsp. dissolvens strain ECC-068 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043972705.1.fna" }, { "af_query": 61.28, "af_reference": 62.22, "ani": 89.44, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP102246.1 Enterobacter cloacae complex sp. R_G8 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_024599795.1.fna" }, { "af_query": 59.19, "af_reference": 61.99, "ani": 89.44, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP162156.1 Enterobacter cloacae strain STK49-C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040892575.1.fna" }, { "af_query": 55.31, "af_reference": 61.17, "ani": 89.40, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP134705.1 Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031852185.1.fna" }, { "af_query": 54.93, "af_reference": 56.71, "ani": 89.39, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM142177.1 Enterobacter hormaechei strain BZHJ2 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_054871305.1.fna" }, { "af_query": 55.26, "af_reference": 56.63, "ani": 89.38, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP126807.1 Enterobacter hormaechei strain 22KM1314 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030848125.1.fna" }, { "af_query": 56.10, "af_reference": 59.71, "ani": 89.37, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017180.1 Enterobacter hormaechei subsp. oharae strain DSM 16687, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729705.1.fna" }, { "af_query": 56.20, "af_reference": 59.09, "ani": 89.37, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017179.1 Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729725.1.fna" }, { "af_query": 55.52, "af_reference": 56.84, "ani": 89.36, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP166433.1 Enterobacter hormaechei strain 2024CK-00699 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_039734725.2.fna" }, { "af_query": 56.46, "af_reference": 59.03, "ani": 89.34, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056747.1 Enterobacter hormaechei strain RHBSTW-00217 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013743755.1.fna" }, { "af_query": 58.60, "af_reference": 59.91, "ani": 89.34, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP085080.1 Enterobacter cloacae strain ECl_1.VN chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_020540925.1.fna" }, { "af_query": 56.51, "af_reference": 58.55, "ani": 89.31, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056742.1 Enterobacter hormaechei strain RHBSTW-00220 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013743295.1.fna" }, { "af_query": 55.56, "af_reference": 57.42, "ani": 89.30, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP104471.1 Enterobacter hormaechei strain 80014967 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025369895.1.fna" }, { "af_query": 56.22, "af_reference": 57.82, "ani": 89.29, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056155.1 Enterobacter hormaechei strain RHBSTW-00844 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013731155.1.fna" }, { "af_query": 55.33, "af_reference": 56.94, "ani": 89.28, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP126878.1 Enterobacter hormaechei strain Ehh_21 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030848005.1.fna" }, { "af_query": 60.37, "af_reference": 60.43, "ani": 89.26, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "OW968328.1 Enterobacter cloacae isolate 1382 genome assembly, chromosome: main", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_905331265.2.fna" }, { "af_query": 55.41, "af_reference": 56.67, "ani": 89.25, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP077308.1 Enterobacter hormaechei strain FDAARGOS 1433 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019048245.1.fna" }, { "af_query": 58.62, "af_reference": 53.31, "ani": 89.25, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM132256.1 Enterobacter cloacae strain 20AR0121 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053691555.1.fna" }, { "af_query": 55.84, "af_reference": 56.35, "ani": 89.23, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP175751.1 Enterobacter hormaechei subsp. xiangfangensis strain NY14234 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_051091715.1.fna" }, { "af_query": 57.61, "af_reference": 57.50, "ani": 89.22, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP043342.1 Enterobacter huaxiensis strain 090008 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003594935.2.fna" }, { "af_query": 55.29, "af_reference": 57.33, "ani": 89.22, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056132.1 Enterobacter hormaechei strain RHBSTW-00916 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013726395.1.fna" }, { "af_query": 55.31, "af_reference": 57.75, "ani": 89.22, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "JARCHI010000010.1 Enterobacter pasteurii strain A-8 NODE_10_covk_22.303966_covr_63.946_cutoff_34, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_028890245.1.fna" }, { "af_query": 54.55, "af_reference": 60.23, "ani": 89.21, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "SJON01000001.1 Enterobacter quasihormaechei strain WCHEQ120003 1, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_004331385.1.fna" }, { "af_query": 55.07, "af_reference": 56.56, "ani": 89.21, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP135594.1 Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_032389435.1.fna" }, { "af_query": 59.38, "af_reference": 61.70, "ani": 89.20, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "WJWQ01000001.1 Enterobacter cloacae subsp. dissolvens strain ATCC 23373 contig00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009660455.1.fna" }, { "af_query": 55.95, "af_reference": 55.58, "ani": 89.20, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056779.1 Enterobacter pasteurii strain D41-sc-1712200 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013376835.1.fna" }, { "af_query": 61.28, "af_reference": 61.55, "ani": 89.19, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP045487.1 Enterobacter cloacae strain 14240244101 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_016864115.1.fna" }, { "af_query": 55.54, "af_reference": 55.23, "ani": 89.19, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM130044.1 Enterobacter hormaechei strain EB00148 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_030411255.2.fna" }, { "af_query": 58.69, "af_reference": 52.70, "ani": 89.18, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP001918.1 Enterobacter cloacae subsp. cloacae ATCC 13047, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_000025565.1.fna" }, { "af_query": 58.34, "af_reference": 57.66, "ani": 89.18, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017475.1 Enterobacter cloacae strain M12X01451 chromosome complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002303275.1.fna" }, { "af_query": 54.51, "af_reference": 54.48, "ani": 89.18, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP173521.1 Enterobacter hormaechei strain 98213 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_045037665.1.fna" }, { "af_query": 53.39, "af_reference": 55.94, "ani": 89.18, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP175755.1 Enterobacter hormaechei subsp. xiangfangensis strain NY14244 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_051092005.1.fna" }, { "af_query": 56.83, "af_reference": 54.64, "ani": 89.16, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143654.1 Enterobacter hormaechei subsp. xiangfangensis strain ECC-257 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043965205.1.fna" }, { "af_query": 54.93, "af_reference": 59.04, "ani": 89.14, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017186.1 Enterobacter hormaechei subsp. hoffmannii strain DSM 14563 chromosome, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001729745.1.fna" }, { "af_query": 58.46, "af_reference": 60.55, "ani": 89.13, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP134674.1 Enterobacter cloacae strain 99183042147 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031851625.1.fna" }, { "af_query": 54.27, "af_reference": 57.54, "ani": 89.13, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP143756.1 Enterobacter hormaechei strain ECC-026 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043973395.1.fna" }, { "af_query": 58.90, "af_reference": 60.38, "ani": 89.13, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM130310.1 Enterobacter cloacae strain 2024HL-01377 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_046015535.2.fna" }, { "af_query": 55.21, "af_reference": 57.77, "ani": 89.11, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP096923.1 Enterobacter hormaechei strain NY0401 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_027595125.1.fna" }, { "af_query": 56.24, "af_reference": 52.74, "ani": 89.11, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP175625.1 Enterobacter hormaechei strain NY1461 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_046097115.1.fna" }, { "af_query": 56.27, "af_reference": 56.52, "ani": 89.11, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM132286.1 Enterobacter hormaechei strain 16AR1296 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053699795.1.fna" }, { "af_query": 54.26, "af_reference": 55.42, "ani": 89.09, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP058157.1 Enterobacter hormaechei strain RHBSTW-00086 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013625435.1.fna" }, { "af_query": 56.59, "af_reference": 55.32, "ani": 89.09, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP136935.1 Enterobacter sp. JJBC chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_036936505.1.fna" }, { "af_query": 54.83, "af_reference": 56.39, "ani": 89.07, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM128657.1 Enterobacter sp. CCM 8629 strain CCM_8629 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052922205.1.fna" }, { "af_query": 55.51, "af_reference": 55.37, "ani": 89.05, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP021902.1 Enterobacter cloacae complex sp. strain AR_0136 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002204775.1.fna" }, { "af_query": 53.66, "af_reference": 55.44, "ani": 89.05, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM130032.1 Enterobacter hormaechei strain EB00226 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_053349035.1.fna" }, { "af_query": 58.67, "af_reference": 59.02, "ani": 89.04, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP134649.1 Enterobacter ludwigii strain 51A:C chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_031851515.1.fna" }, { "af_query": 56.07, "af_reference": 54.37, "ani": 89.03, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP174601.1 Enterobacter hormaechei strain NY2861 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_050871265.1.fna" }, { "af_query": 55.01, "af_reference": 56.89, "ani": 89.00, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "JBBMFH010000001.1 Enterobacter intestinihominis strain CLA-AC-H004 CLA-AC-H004_contig_1_length_435703, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_040096145.1.fna" }, { "af_query": 58.58, "af_reference": 60.73, "ani": 88.94, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP028950.1 Enterobacter cloacae complex sp. FDA-CDC-AR_0164 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_003071645.1.fna" }, { "af_query": 58.42, "af_reference": 60.44, "ani": 88.94, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP174015.1 Enterobacter ludwigii strain 2024CK-01663 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_043647335.2.fna" }, { "af_query": 55.43, "af_reference": 54.17, "ani": 88.91, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP034754.1 Enterobacter hormaechei subsp. hoffmannii strain Eh1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009834325.1.fna" }, { "af_query": 58.45, "af_reference": 62.69, "ani": 88.89, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP099310.1 Enterobacter ludwigii strain RHB28-E3-C01 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_029718255.1.fna" }, { "af_query": 59.37, "af_reference": 60.27, "ani": 88.83, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP017279.1 Enterobacter ludwigii strain EN-119 chromosome, complete sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001750725.1.fna" }, { "af_query": 58.30, "af_reference": 59.21, "ani": 88.82, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP133410.1 Enterobacter ludwigii strain AG32E chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_035323105.1.fna" }, { "af_query": 54.53, "af_reference": 52.57, "ani": 88.80, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP056719.1 Enterobacter hormaechei strain RHBSTW-00333 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_013738375.1.fna" }, { "af_query": 58.30, "af_reference": 58.82, "ani": 88.71, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP192448.1 Enterobacter ludwigii strain 4b24 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_050626905.1.fna" }, { "af_query": 54.49, "af_reference": 54.14, "ani": 88.70, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CM128643.1 Enterobacter sp. CCM 8630 strain CCM_8630 chromosome, complete sequence, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_052921675.1.fna" }, { "af_query": 57.73, "af_reference": 59.17, "ani": 88.69, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP099325.1 Enterobacter ludwigii strain RHB47-SO-C01 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_029721015.1.fna" }, { "af_query": 50.18, "af_reference": 56.36, "ani": 88.65, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "AP019007.1 Enterobacter oligotrophicus CCA6 DNA, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_009176645.1.fna" }, { "af_query": 47.84, "af_reference": 49.88, "ani": 87.98, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP077290.1 Enterobacter cancerogenus strain FDAARGOS 1428 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_019047785.1.fna" }, { "af_query": 47.84, "af_reference": 48.73, "ani": 87.85, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "LR881936.1 Enterobacter cancerogenus strain UPC1 genome assembly, chromosome: UPC1", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_904425455.1.fna" }, { "af_query": 47.63, "af_reference": 49.93, "ani": 87.66, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP025225.1 Enterobacter cancerogenus strain CR-Eb1 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_002850575.1.fna" }, { "af_query": 43.10, "af_reference": 44.30, "ani": 87.15, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "CP104014.1 Enterobacter sp. CP102 chromosome, complete genome", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_025152625.1.fna" }, { "af_query": 41.97, "af_reference": 42.56, "ani": 86.70, "query_contig": "CP143680.1 Enterobacter sp. ECC-219 chromosome, complete genome", "reference_contig": "LXES01000001.1 Enterobacter soli ATCC BAA-2102 Sequence00001, whole genome shotgun sequence", "reference_file": "/enterobacter-reference/sequences/primary_whole/GCA_001654845.1.fna" } ], "screen_percent": 80, "settings": "primary", "sketched_bases": 5027913, "total_input_bases": 5027913 }, "method_diagnostics": [ { "anim_meets_species_gate": { "QR": false, "RQ": false }, "expected_ANI_method_crossing": false, "gate_disagreement": false, "reference_id": "primary_whole:GCA_026344075.1", "skani": { "af_query_percent": 82.65, "af_reference_percent": 88.26, "ani_percent": 94.83 }, "skani_meets_species_gate": false, "vetoes": false } ], "mlst": { "alleles": { "dnaA": "590", "fusA": "263", "gyrB": "415", "leuS": "493", "pyrG": "302", "rplB": "170", "rpoB": "101" }, "candidate_is_reported_ST": false, "comparator_style": { "SCORE": 100, "ST": "2274", "STATUS": "PERFECT" }, "copy_diagnostic_reasons": [], "database": { "allele_count": 4751, "complete_through_cutoff_independently_established": false, "cutoff_evidence": "Primary server explicitly restricts anonymous scheme and all seven locus exports to records submitted on or prior to 2024-12-31", "data_sha256": { "pubmlst/ecloacae/dnaA.tfa": "cb78a1c22e209d58e4399909fa7a7cc26f3def2c7c83ee5a4c2441f2a7a92b2a", "pubmlst/ecloacae/ecloacae.txt": "ea08c616718901d21ae96b6c5af78747b9f160697112a886fc9e68d7333046af", "pubmlst/ecloacae/fusA.tfa": "c93c4f044bc615f6b8b3506a103852ef7d2a1bf9336bcc2b27a785091b5227a8", "pubmlst/ecloacae/gyrB.tfa": "20b0985b1ab7d10a94ec51bc081616d3789f4dec4293642c01b7927c01677ff8", "pubmlst/ecloacae/leuS.tfa": "5d29f152cc9050dad4a50a74bbac5ba5477be7620632d32b2773fec728ff9b50", "pubmlst/ecloacae/pyrG.tfa": "aa29aae067f04bef8e552cae870d8794224c09f3fdd73bdc395f9deb77678207", "pubmlst/ecloacae/rplB.tfa": "b6b37cd3b396fa3e449ca60e0347bed82eb92318b5cc1461b4b05284173aed3f", "pubmlst/ecloacae/rpoB.tfa": "8ba6f160a52019e6a337e0648d2cf731f570947002950e4008f5072f2cfec015" }, "data_terms_url": "https://pubmlst.org/terms-conditions", "limitation": "Bundled MLST database: limited to PubMLST records submitted on or before 31 December 2024. Alleles, ST profiles and schemes submitted from 1 January 2025 onward are not included. Unmatched profiles may therefore correspond to STs described after this cutoff.", "loci": [ "dnaA", "fusA", "gyrB", "leuS", "pyrG", "rplB", "rpoB" ], "package_id": "enterobacter-pubmlst-pre2025-retrieved-20261006", "package_manifest_sha256": "0f0a4bd051e7a29d97f530a38982026df10ca223805e7b0147b19796763978dd", "post_cutoff_currency": "not_claimed", "profile_count": 3291, "retrieved_utc": "2026-10-05T22:48:14.036646+00:00", "scheme": "ecloacae", "scheme_description": "Enterobacter spp. seven-locus MLST", "sequence_state": "2026 retrieval of anonymously accessible pre-2025-submission records; not a 2024 byte snapshot", "source_urls": { "pubmlst/ecloacae/dnaA.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/dnaA/alleles_fasta", "pubmlst/ecloacae/ecloacae.txt": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/schemes/1/profiles_csv", "pubmlst/ecloacae/fusA.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/fusA/alleles_fasta", "pubmlst/ecloacae/gyrB.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/gyrB/alleles_fasta", "pubmlst/ecloacae/leuS.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/leuS/alleles_fasta", "pubmlst/ecloacae/pyrG.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/pyrG/alleles_fasta", "pubmlst/ecloacae/rplB.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/rplB/alleles_fasta", "pubmlst/ecloacae/rpoB.tfa": "https://rest.pubmlst.org/db/pubmlst_ecloacae_seqdef/loci/rpoB/alleles_fasta" }, "submission_cutoff": "2024-12-31" }, "discordant_exact_allele_loci": [], "engine": { "comparator": { "name": "mlst 2.32.2 with BLAST+ 2.16.0", "relation": "rules reproduced on development fixtures; comparator not executed" }, "implementation": { "name": "pterobacter", "version": "0.0.0" }, "method": "exact 32-mer seeds with ungapped X-drop extension", "name": "terobacter-ungapped-mlst", "profile": { "ambiguous_bases": "mismatch", "evalue": "1e-20", "min_coverage_percent": 50, "min_identity_percent": 95, "penalty": -2, "reward": 1, "word_size": 32, "xdrop_raw": 13 }, "version": "1" }, "input_kind": "assembly", "location_verification": "exact_locations_checked_against_the_hashed_query_sequence", "loci": [ { "locus": "dnaA", "raw_token": "590", "reported_allele_ids": [ "590" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "590", "end_1based_inclusive": 648620, "record_id": "CP143680.1", "start_1based": 648179, "strand": "plus" } ], "state": "single_exact_allele" }, { "locus": "fusA", "raw_token": "263", "reported_allele_ids": [ "263" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "263", "end_1based_inclusive": 189044, "record_id": "CP143680.1", "start_1based": 188399, "strand": "minus" } ], "state": "single_exact_allele" }, { "locus": "gyrB", "raw_token": "415", "reported_allele_ids": [ "415" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "415", "end_1based_inclusive": 652288, "record_id": "CP143680.1", "start_1based": 651855, "strand": "plus" } ], "state": "single_exact_allele" }, { "locus": "leuS", "raw_token": "493", "reported_allele_ids": [ "493" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "493", "end_1based_inclusive": 2016418, "record_id": "CP143680.1", "start_1based": 2015841, "strand": "minus" } ], "state": "single_exact_allele" }, { "locus": "pyrG", "raw_token": "302", "reported_allele_ids": [ "302" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "302", "end_1based_inclusive": 2624006, "record_id": "CP143680.1", "start_1based": 2623748, "strand": "plus" } ], "state": "single_exact_allele" }, { "locus": "rplB", "raw_token": "170", "reported_allele_ids": [ "170" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "170", "end_1based_inclusive": 170469, "record_id": "CP143680.1", "start_1based": 169863, "strand": "minus" } ], "state": "single_exact_allele" }, { "locus": "rpoB", "raw_token": "101", "reported_allele_ids": [ "101" ], "reported_ids_are_exact": true, "sequence_verified_exact_locations": [ { "allele_id": "101", "end_1based_inclusive": 881215, "record_id": "CP143680.1", "start_1based": 880671, "strand": "plus" } ], "state": "single_exact_allele" } ], "multiple_ids_same_sequence_loci": [], "profile_compatible_candidate_ST": null, "query_sha256": "34f4924c5954e5c424ecdb5476386a3f5ddbfc7d09aa6be2f32c049806b177a0", "repeated_same_allele_loci": [], "requested": true, "schema": "terobacter.mlst/1", "scheme": "ecloacae", "scheme_routing": "explicitly_selected; applicability_not_established_by_ST", "sequence_scope": "whole_assembly_as_supplied", "sequence_type": "2274", "state": "exact_profile_match", "status": "complete", "taxonomic_assignment_performed": false, "typing_role": "supplementary; does not establish genus, species, subspecies, lineage or genomovar", "unconfirmed_repeated_hit_loci": [] }, "nearest_parent": { "concept_id": "ECTX-SP014", "kind": "species", "name": "Enterobacter nematophilus" }, "panel_summary": [ { "anim_unmeasured_reference_count": 0, "best_skani_ani_percent": 94.83, "best_skani_reference_ids": [ "primary_whole:GCA_026344075.1" ], "challenging_reference_ids": [], "in_top_references": true, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP014", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 94.31, "best_skani_reference_ids": [ "primary_whole:GCA_031218175.1" ], "challenging_reference_ids": [], "in_top_references": true, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP003", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 4, "best_skani_ani_percent": 93.37, "best_skani_reference_ids": [ "primary_whole:GCA_039718975.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 4, "parent": { "concept_id": "ECTX-SP007", "kind": "species" }, "returned_reference_count": 4 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 92.48, "best_skani_reference_ids": [ "primary_whole:GCA_035556915.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP002", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 4, "best_skani_ani_percent": 91.98, "best_skani_reference_ids": [ "primary_whole:GCA_030406165.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 4, "parent": { "concept_id": "ECTX-SP017", "kind": "species" }, "returned_reference_count": 4 }, { "anim_unmeasured_reference_count": 7, "best_skani_ani_percent": 91.97, "best_skani_reference_ids": [ "primary_whole:GCA_007035975.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 7, "parent": { "concept_id": "ECTX-SP023", "kind": "species" }, "returned_reference_count": 7 }, { "anim_unmeasured_reference_count": 14, "best_skani_ani_percent": 91.85, "best_skani_reference_ids": [ "primary_whole:GCA_001729805.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 14, "parent": { "concept_id": "ECTX-SP019", "kind": "species" }, "returned_reference_count": 14 }, { "anim_unmeasured_reference_count": 3, "best_skani_ani_percent": 91.63, "best_skani_reference_ids": [ "primary_whole:GCA_001984825.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 3, "parent": { "concept_id": "ECTX-SP005", "kind": "species" }, "returned_reference_count": 3 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 91.63, "best_skani_reference_ids": [ "primary_whole:GCA_001729765.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP011", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 91.11, "best_skani_reference_ids": [ "primary_whole:GCA_034008295.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP006", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 4, "best_skani_ani_percent": 90.82, "best_skani_reference_ids": [ "primary_whole:GCA_042434935.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 4, "parent": { "concept_id": "ECTX-SP021", "kind": "species" }, "returned_reference_count": 4 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 90.68, "best_skani_reference_ids": [ "primary_whole:GCA_003964905.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP013", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 90.02, "best_skani_reference_ids": [ "primary_whole:GCA_023023105.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP001", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 3, "best_skani_ani_percent": 89.63, "best_skani_reference_ids": [ "primary_whole:GCA_004331265.1", "primary_whole:GCA_035835995.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 3, "parent": { "concept_id": "ECTX-SP024", "kind": "species" }, "returned_reference_count": 3 }, { "anim_unmeasured_reference_count": 13, "best_skani_ani_percent": 89.51, "best_skani_reference_ids": [ "primary_whole:GCA_000235765.3" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 13, "parent": { "concept_id": "ECTX-SP008", "kind": "species" }, "returned_reference_count": 13 }, { "anim_unmeasured_reference_count": 30, "best_skani_ani_percent": 89.45, "best_skani_reference_ids": [ "primary_whole:GCA_001729785.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 30, "parent": { "concept_id": "ECTX-SP025", "kind": "species" }, "returned_reference_count": 30 }, { "anim_unmeasured_reference_count": 5, "best_skani_ani_percent": 89.4, "best_skani_reference_ids": [ "primary_whole:GCA_031852185.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 5, "parent": { "concept_id": "ECTX-SP009", "kind": "species" }, "returned_reference_count": 5 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 89.22, "best_skani_reference_ids": [ "primary_whole:GCA_003594935.2" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP010", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 2, "best_skani_ani_percent": 89.22, "best_skani_reference_ids": [ "primary_whole:GCA_028890245.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 2, "parent": { "concept_id": "ECTX-SP016", "kind": "species" }, "returned_reference_count": 2 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 89.21, "best_skani_reference_ids": [ "primary_whole:GCA_004331385.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP018", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 8, "best_skani_ani_percent": 89.04, "best_skani_reference_ids": [ "primary_whole:GCA_031851515.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 8, "parent": { "concept_id": "ECTX-SP012", "kind": "species" }, "returned_reference_count": 8 }, { "anim_unmeasured_reference_count": 1, "best_skani_ani_percent": 88.65, "best_skani_reference_ids": [ "primary_whole:GCA_009176645.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 1, "parent": { "concept_id": "ECTX-SP015", "kind": "species" }, "returned_reference_count": 1 }, { "anim_unmeasured_reference_count": 3, "best_skani_ani_percent": 87.98, "best_skani_reference_ids": [ "primary_whole:GCA_019047785.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 3, "parent": { "concept_id": "ECTX-SP004", "kind": "species" }, "returned_reference_count": 3 }, { "anim_unmeasured_reference_count": 2, "best_skani_ani_percent": 87.15, "best_skani_reference_ids": [ "primary_whole:GCA_025152625.1" ], "challenging_reference_ids": [], "in_top_references": false, "panel_reference_count": 2, "parent": { "concept_id": "ECTX-SP022", "kind": "species" }, "returned_reference_count": 2 } ], "policy_id": "conservative-assembly-anim-v2", "policy_mode": "default_candidate", "purity_established": false, "reasons": [ "ANIm_no_strict_witness" ], "reference_package": { "cohort_coverage_summary": { "named_Enterobacter_reference_evidence_present": 1046, "named_other_genus_context_reference_absent": 1, "restricted_or_out_of_genus_context_reference_absent": 14, "reviewed_unassigned_lineage_reference_absent": 9 }, "components": { "genomovar_chromosome": { "builds": [ { "bytes": 1761, "path": "metadata/build/genomovar_chromosome/000.artifact", "roles": [ "build:genomovar_chromosome:0" ], "sha256": "96931123b9de233ea33e66ecb81771c8d48d22b813c0ec167aa2ed254a214f81" }, { "bytes": 12, "path": "metadata/build/genomovar_chromosome/001.artifact", "roles": [ "build:genomovar_chromosome:1" ], "sha256": "bfff17ce9354b372251e0fcdbba1f0daf81ff94ccac67eb9349d2cff2724c60d" } ], "database_format": "skani-0.3.2-consolidated-bincode1", "databases": { "index.db": { "bytes": 16962, "path": "databases/genomovar_chromosome/index.db", "roles": [ "database:genomovar_chromosome:index.db" ], "sha256": "3d93da28e0544062d6dc415e731be32c1ff77126805b4cad73ba71998dcb44ac" }, "markers.bin": { "bytes": 6527673, "path": "databases/genomovar_chromosome/markers.bin", "roles": [ "database:genomovar_chromosome:markers.bin" ], "sha256": "f85f9f407688c6838809a40e64617584ec2d234a675323d95c898eebbd8e6aec" }, "sketches.db": { "bytes": 88221665, "path": "databases/genomovar_chromosome/sketches.db", "roles": [ "database:genomovar_chromosome:sketches.db" ], "sha256": "51d67cf660ceda051ede771890a6e176a1d65823982b09e05fa704e54fed3cf8" } }, "engine": "skani", "engine_version": "0.3.2", "reference_count": 173, "reference_role": "genomovar_definition_member", "sequence_scope": "historical_chromosome_record_set" }, "primary_whole": { "builds": [ { "bytes": 1740, "path": "metadata/build/primary_whole/000.artifact", "roles": [ "build:primary_whole:0" ], "sha256": "5fe47e2146a42d40094667f07562aaefc6d4730e464affd6427a52df11f198ce" }, { "bytes": 12, "path": "metadata/build/primary_whole/001.artifact", "roles": [ "build:primary_whole:1" ], "sha256": "bfff17ce9354b372251e0fcdbba1f0daf81ff94ccac67eb9349d2cff2724c60d" } ], "database_format": "skani-0.3.2-consolidated-bincode1", "databases": { "index.db": { "bytes": 12748, "path": "databases/primary_whole/index.db", "roles": [ "database:primary_whole:index.db" ], "sha256": "3123ec038d17f53a08c83005d5e3c0b8d9e33e3b28b35ee93590d2668580396b" }, "markers.bin": { "bytes": 5562948, "path": "databases/primary_whole/markers.bin", "roles": [ "database:primary_whole:markers.bin" ], "sha256": "7589c7eca707790a135015db7c409e08d817347c4479a1feaa693871f3b508f8" }, "sketches.db": { "bytes": 73466422, "path": "databases/primary_whole/sketches.db", "roles": [ "database:primary_whole:sketches.db" ], "sha256": "9be6a043222deec1b2975483f2d3b021a76935b0b0f13a327300119fa64e99ab" } }, "engine": "skani", "engine_version": "0.3.2", "reference_count": 140, "reference_role": "primary_named_reference_evidence", "sequence_scope": "whole_assembly_as_deposited" } }, "counts": { "context_lineage_concepts": 7, "development_context_records_not_packaged": 20, "eligible_cohort_records": 1070, "eligible_species_reference_represented": 1046, "genomovar_concepts": 25, "historical_chromosome_definition_references": 173, "named_concepts": 35, "primary_historical_type_accessions": 33, "primary_whole_references": 140, "reference_scope_records": 313, "unique_accessions": 305 }, "licence": { "ncbi_submitter_rights_disclaimer": "The reference sketches in this package were derived from assemblies obtained from NCBI databases. NCBI's molecular data usage policy states: \"some submitters of the original data (or the country of origin of such data) may claim patent, copyright, or other intellectual property rights in all or a portion of the data (that has been submitted). NCBI is not in a position to assess the validity of such claims and since there is no transfer of rights from submitters to NCBI, NCBI has no rights to transfer to a third party. Therefore, NCBI cannot provide comment or unrestricted permission concerning the use, copying, or distribution of the information contained in the molecular databases.\" Source: https://www.ncbi.nlm.nih.gov/home/about/policies/ (Molecular Data Usage), retrieved 2026-10-09.", "package_version": "2026-10-15", "schema_version": "2.0.0-reference-licence-manifest", "sha256": "bd5ec5711313bd1f457a9a36aa009fb0671b73c7f58cdf242ba1eed4ce1f6b94" }, "package": { "converted_from_sha256": null, "export_validation_sha256": "9abd37288a3a4594d8e0d04a82db7d198c906038f7f8a9814f7d97607994eb46", "id": "enterobacter-reference", "manifest_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "release_state": "public_reference_export", "schema_version": "2.1.0-public-portable-reference-package", "source_manifest_sha256": "f6e822072b532a5ae90a3d9e09b5d2e47a2f87dbf3cc69824e48ebd022a668c5", "trust_basis": "catalogue_pinned_manifest_digest_and_export_attestation", "version": "2026-10-15" }, "status": "verified" }, "rescue_status": "withheld", "schema": "3.0.0-conditional-assembly-report", "scope_assessment": { "outcome": "not_assessed", "reason": "No scope assessment supplied; coverage alone does not explain extra sequence." }, "settings_sha256": "a09608fda315c530db1f6699c4e25e3e6ac0c2b26cde26e60dbe9c467110089b", "species_id": null, "species_name": null, "status": "unresolved", "subspecies_id": null, "subspecies_name": null, "subspecies_reason": "parent_species_unresolved", "thresholds": { "both_af_minimum": "80", "conflict_ani": "96", "species_ani": "96", "subspecies_ani": "98", "subspecies_margin_percentage_points": "1", "supplied": null, "trigger_lower_ani": "94.5" }, "top_references": [ { "anim": { "QR": { "D": 8546037, "E": 212384, "af_query_percent": 84.94572201229417, "af_reference_percent": 90.713529437377, "identity_percent": 95.02964941527868, "query_covered": 4270997, "query_length": 5027913, "reference_covered": 4270988, "reference_length": 4708215, "status": "aligned" }, "RQ": { "D": 8543916, "E": 212132, "af_query_percent": 84.93973543297189, "af_reference_percent": 90.68887041054838, "identity_percent": 95.0343144759382, "query_covered": 4270696, "query_length": 5027913, "reference_covered": 4269827, "reference_length": 4708215, "status": "aligned" }, "finished": true, "minimum_af_percent": 84.93973543297189, "minimum_identity_percent": 95.02964941527868 }, "lineage_id": null, "parent": { "concept_id": "ECTX-SP014", "kind": "species" }, "reference_id": "primary_whole:GCA_026344075.1", "reference_role": "type_anchor", "reference_sha256": "87a4e696dd22f9d3525ca5f877424cdb85264a74ef8846bb4a42b5d3ec3e53be", "skani": { "af_query_percent": 82.65, "af_reference_percent": 88.26, "ani_percent": 94.83 }, "species_id": "ECTX-SP014", "species_name": "Enterobacter nematophilus", "subspecies_id": null, "tie_group": 0 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP003", "kind": "species" }, "reference_id": "primary_whole:GCA_031218175.1", "reference_role": "diversity", "reference_sha256": "0df38b8c2e98b2a7f03f86a51cd8114e3b1769aab8b1ad7968fa4eb2a1cf1299", "skani": { "af_query_percent": 80.89, "af_reference_percent": 85.57, "ani_percent": 94.31 }, "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": null, "tie_group": 1 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP003", "kind": "species" }, "reference_id": "primary_whole:GCA_043970685.1", "reference_role": "diversity", "reference_sha256": "92523f22d7cd90e3e8ff58bed7db4fb110c99ec8d503b8fca65aebe8d7a5dd62", "skani": { "af_query_percent": 80.33, "af_reference_percent": 86.03, "ani_percent": 94.3 }, "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": null, "tie_group": 2 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP003", "kind": "species" }, "reference_id": "primary_whole:GCA_043967505.1", "reference_role": "diversity", "reference_sha256": "ffef927c5d0367af1a24f6e2f41d5f922862c2490a2d5b16e0d8058efaf174d8", "skani": { "af_query_percent": 81.06, "af_reference_percent": 85.68, "ani_percent": 94.18 }, "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": null, "tie_group": 3 }, { "anim": null, "lineage_id": null, "parent": { "concept_id": "ECTX-SP003", "kind": "species" }, "reference_id": "primary_whole:GCA_043966825.1", "reference_role": "diversity", "reference_sha256": "524d874be6b67c1f4a1ef9ed1c6572a9fac4c315a2c2e03b2d6972430667ac6b", "skani": { "af_query_percent": 80.54, "af_reference_percent": 84.03, "ani_percent": 94.06 }, "species_id": "ECTX-SP003", "species_name": "Enterobacter bugandensis", "subspecies_id": null, "tie_group": 4 } ], "trigger": true, "trigger_state": "triggered_with_witness_candidate", "validation_status": "not_yet_validated", "versions": { "anim_method": "reciprocal-mummer4-4.0.1-preserve-n-mum-1-span-v1", "evidence_schema": "2.0.0-dev-evidence", "implementation": "0.0.0", "policy": "conservative-assembly-anim-v2", "policy_contract": "P1-r1", "reference_data": { "manifest_sha256": "f7c82d8e912fdb08aec93b190316f482fd462b3c514c5b374f8c694af1278e28", "package_id": "enterobacter-reference", "package_version": "2026-10-15", "schema_version": "2.1.0-public-portable-reference-package" }, "report_schema": "3.0.0-conditional-assembly-report", "skani_engine_version": "0.3.2", "skani_method": "skani-0.3.2-avx2-content-order-dna-v2", "validation": "not_yet_validated" }, "witness": null, "witness_assessment": [ { "anim": { "QR": { "D": 8546037, "E": 212384, "af_query_percent": 84.94572201229417, "af_reference_percent": 90.713529437377, "identity_percent": 95.02964941527868, "query_covered": 4270997, "query_length": 5027913, "reference_covered": 4270988, "reference_length": 4708215, "status": "aligned" }, "RQ": { "D": 8543916, "E": 212132, "af_query_percent": 84.93973543297189, "af_reference_percent": 90.68887041054838, "identity_percent": 95.0343144759382, "query_covered": 4270696, "query_length": 5027913, "reference_covered": 4269827, "reference_length": 4708215, "status": "aligned" }, "finished": true, "minimum_af_percent": 84.93973543297189, "minimum_identity_percent": 95.02964941527868 }, "finished": true, "reference_id": "primary_whole:GCA_026344075.1", "skani": { "af_query_percent": 82.65, "af_reference_percent": 88.26, "ani_percent": 94.83 }, "strict_pass": false } ] } ]